Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00122 ATGTATCCACATCAGCAGCAGCAGCAGATGCAACATTTCTATCCATCTTCAAACCCATTCCTTTGGGCTTCAGAACCTTCTATTCACCCTCCTGGAACCGACCCAGTTCCCAATTGCAGCTCCTATATTTCAAATTCAACCCTTTCCGTTGCTCCTTCTTACTCTTATGCTGCCCCACAATCAACTGATCCTCAGAATTGGATCGTTAAACAACCTGAATCCGTTGGATATGATGCTGCTGTTGGATCATCATCATCAATGTCTTCAAGTTTGCCTTTGACTTACGACGGCACATGGTTACAGCAAATTTTCACTCATGAGGAGGCTAACCAAACCAAAGGCTCCAAATCAATGAGATGTGAAGTTTGCAAAATCGATTGTAATAGCAAAGACGTTTATGAAAAGCACATATTTGGAAAGAAACACAAGAAGAATATGCAGATAATTGCTAATCCCATGCAAGCAAATGTACAAAGTCAAACAAGTGTATGCAGCGAGGTAAAGAAACGGAAGCTTTCAAATGGTGGTGCACCGGTTGATTCTACGAAGATTTGCACAATTTGCAACATTGTGTGCAACAGCCAAGATGTATATAACAAACATATAGCAGGAAAAAAGCATGCGGCTCAGGTTGCATTGATGTCCAACAACGGGATTGGTCCATACATTGCTGCATTTAAGAGTCAAGGTATTGGTCCTTGGAAAAAAGCACCAAAGAAGGTCAAGGTTATGCAACCTGTATGGTGTGACACTTGCAAGGTTACTTGTAATAGCAGGGATATGTATGTTTCACACTTAGCGGGGAAGAAACATCTCAAAAACTTGGAGAAACAGTCAAAACCAGAAGCCAGTGCAAATGCCGCCAAACTGTTAATTGGCCCGCAGGAAAAGCCGAATACTGATAAAGTGAAATCGGAGGAAAAGCCGGATACCGATAAACCAAAAGCAAAGAAGGCTAAGGACTTGGATATCGAGGCAAAGAAGCTCAAGGTTGTAGAAGGTGGCACTGCTGCAGATTCTGTTAGAACGTGCACTGCTTGTAATGTTGTATGCAACAGCGAGACAGTTTTCAATGCTCACCTTATTGGCCATAAACATGCTGCTATGGTGAAGAAGCAAAATTTGGAGTCAAATGGGACAACTGCTAGCTGA 1152 0.4227 MYPHQQQQQMQHFYPSSNPFLWASEPSIHPPGTDPVPNCSSYISNSTLSVAPSYSYAAPQSTDPQNWIVKQPESVGYDAAVGSSSSMSSSLPLTYDGTWLQQIFTHEEANQTKGSKSMRCEVCKIDCNSKDVYEKHIFGKKHKKNMQIIANPMQANVQSQTSVCSEVKKRKLSNGGAPVDSTKICTICNIVCNSQDVYNKHIAGKKHAAQVALMSNNGIGPYIAAFKSQGIGPWKKAPKKVKVMQPVWCDTCKVTCNSRDMYVSHLAGKKHLKNLEKQSKPEASANAAKLLIGPQEKPNTDKVKSEEKPDTDKPKAKKAKDLDIEAKKLKVVEGGTAADSVRTCTACNVVCNSETVFNAHLIGHKHAAMVKKQNLESNGTTAS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00122 383 SMART c2h2final6 342 364 IPR013087 -
Aip10g00122 383 SMART c2h2final6 183 207 IPR013087 -
Aip10g00122 383 SMART c2h2final6 247 271 IPR013087 -
Aip10g00122 383 SMART c2h2final6 118 142 IPR013087 -
Aip10g00122 383 SUPERFAMILY beta-beta-alpha zinc fingers 337 372 IPR036236 -
Aip10g00122 383 Gene3D Classic Zinc Finger 336 382 - -
Aip10g00122 383 SUPERFAMILY beta-beta-alpha zinc fingers 242 278 IPR036236 -
Aip10g00122 383 SUPERFAMILY beta-beta-alpha zinc fingers 109 148 IPR036236 -
Aip10g00122 383 MobiDBLite consensus disorder prediction 292 319 - -
Aip10g00122 383 Pfam Zinc-finger of C2H2 type 343 366 - -
Aip10g00122 383 Pfam Zinc-finger of C2H2 type 184 207 - -
Aip10g00122 383 Pfam Zinc-finger of C2H2 type 248 271 - -
Aip10g00122 383 Pfam Zinc-finger of C2H2 type 120 142 - -
Aip10g00122 383 Gene3D Classic Zinc Finger 234 279 - -
Aip10g00122 383 Gene3D Classic Zinc Finger 101 148 - -
Aip10g00122 383 Gene3D Classic Zinc Finger 162 214 - -
Aip10g00122 383 PANTHER - 166 216 - -
Aip10g00122 383 PANTHER - 4 162 - -
Aip10g00122 383 PANTHER - 225 376 - -
Aip10g00122 383 PANTHER ZINC FINGER RNA-BINDING PROTEIN 166 216 - -
Aip10g00122 383 PANTHER ZINC FINGER RNA-BINDING PROTEIN 225 376 - -
Aip10g00122 383 PANTHER ZINC FINGER RNA-BINDING PROTEIN 4 162 - -
Aip10g00122 383 MobiDBLite consensus disorder prediction 299 319 - -
Aip10g00122 383 SUPERFAMILY beta-beta-alpha zinc fingers 179 214 IPR036236 -
Aip10g00122 383 SMART ZnF_U1_5 244 278 IPR003604 GO:0003676|GO:0008270
Aip10g00122 383 SMART ZnF_U1_5 339 373 IPR003604 GO:0003676|GO:0008270
Aip10g00122 383 SMART ZnF_U1_5 180 214 IPR003604 GO:0003676|GO:0008270
Aip10g00122 383 SMART ZnF_U1_5 115 149 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00122 Aip-Chr10 1122227 1125188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00122 176 370 C2H2 Transcription Factor Family AT5G61190 29.744 4.03e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip10g00122 zf-met 1.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00122 - - adu:107463587 749.199