Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00114 ATGAGTATTATGAGTAGTAGTAGTCATCAGTATTTGGTTCCAAACTGGAACATGAAACAACAACAACAACAAAGACAAGAACAAGAAACACTCCAATTAGAAGAGGGTATTACTATTACCAAATCTTCTCAAGCTCCTCCCACCACTCATCTTGTTCCCATGGCTAATAATTATGATGAGATTGCAGAGCTGACATGGGAAAATGGGCAGATATCAATGCATGGGCTCAGTGGGCTTGATCCAACTTCACAAAAAAAGCCCATATGGGTTAATAGGGCCCATGATACATTAGAGTCCATTGTTCAACAAGCCACATGCAACAATAAAAAGTCAAAGTTGACCATAAAAGACAACCATGCTTATGTTGATGTTCCTACCACAACAAGCTCCATTGTTGCATCCTCAGGGGAACATCATCAAATGGTGCCAACACTTTCAAGGAAAAGATCACATTCTTCTTATTCCGATCAACAACAACATCGGAGAGATGTTAATTATGTTAGCATCAATAATACTAAGAAGATGTTATTAGAAGATCATAATACTAATAATAGAAAATGTGGTGTTGCTACTGCTAGTGTCACATTTTGTAAGGACAACAATGACATCACAACCATGATGACGTGTCCTTCTCTTGACTCTGGTCCAAGAAGCTTCAAAAATGATAAGATTCTTGAGGAGGATTCTGCTTGTCAAAGTGGATCGGAGGTTCGGAATAATGAAAATGATAGAGATGGTGGGAAAGGTGAAACAGGGCAGAGCAAATCATCATCAGTTGTAAGGAGAAATAGAACTGCTGCCGTCCATAATCAATCAGAGCGGAGAAGAAGAGATAGAATTAATCAGAAGATGAAAGCATTGCAGCGGTTAGTGCCTAATGCAAATAAGACAGACAAAGCTTCAATGTTGGATGAGGTGATTAAGTACTTGAAACAACTTCAAGCACAAATAGAAATGATGATGAGTGTGAGCATGCCACAGATGATAATGCAACAACAACTTCAAATGTCTATGCTAGCAAGATCAATGGCAAACAATGCTCCAAATCCAATTAGGCCATTGTTTCCACAACTCATCCAACCAACAACAACAATTGGAGCTGCTAACACTGCCTCTGCTCCAATGTTTCTTGCACCTTCCTTGATGATGCCTTCAAGCACCAATGCTTCATTTCCTCTGCCTTCTGCTTCATATGGGACTCCTACTTTTGCACAACCACTTAATATGGATATGTTGAACAACATGGCAGCATTTTACAGCCAACAGATGAATCATCATCAGAACAATCAAATCAAACCATGA 1302 0.3925 MSIMSSSSHQYLVPNWNMKQQQQQRQEQETLQLEEGITITKSSQAPPTTHLVPMANNYDEIAELTWENGQISMHGLSGLDPTSQKKPIWVNRAHDTLESIVQQATCNNKKSKLTIKDNHAYVDVPTTTSSIVASSGEHHQMVPTLSRKRSHSSYSDQQQHRRDVNYVSINNTKKMLLEDHNTNNRKCGVATASVTFCKDNNDITTMMTCPSLDSGPRSFKNDKILEEDSACQSGSEVRNNENDRDGGKGETGQSKSSSVVRRNRTAAVHNQSERRRRDRINQKMKALQRLVPNANKTDKASMLDEVIKYLKQLQAQIEMMMSVSMPQMIMQQQLQMSMLARSMANNAPNPIRPLFPQLIQPTTTIGAANTASAPMFLAPSLMMPSSTNASFPLPSASYGTPTFAQPLNMDMLNNMAAFYSQQMNHHQNNQIKP 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00114 433 Coils Coil 270 290 - -
Aip10g00114 433 MobiDBLite consensus disorder prediction 251 266 - -
Aip10g00114 433 MobiDBLite consensus disorder prediction 228 280 - -
Aip10g00114 433 SMART finulus 270 319 IPR011598 GO:0046983
Aip10g00114 433 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 16 429 IPR031066 -
Aip10g00114 433 Gene3D - 260 322 IPR036638 GO:0046983
Aip10g00114 433 MobiDBLite consensus disorder prediction 134 152 - -
Aip10g00114 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 326 IPR036638 GO:0046983
Aip10g00114 433 MobiDBLite consensus disorder prediction 134 162 - -
Aip10g00114 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Aip10g00114 433 CDD bHLH_AtPIF_like 264 321 - -
Aip10g00114 433 PANTHER TRANSCRIPTION FACTOR PIF7 16 429 - -
Aip10g00114 433 Pfam Helix-loop-helix DNA-binding domain 268 314 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00114 Aip-Chr10 1052159 1056621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00114 60 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 34.146 2.78e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g00114 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00114 - - aip:107624044 825.854