LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g00106	ATGGGATGCGTCAGCTCCAAGCAGGCGGTCTCCGTCACGCCTGCCATCGACCACTCCGGGGCCTTCCGCCCCAATGCCGCCGACTTTTCCGACACCAACAACAAGAACAACGAGAGGACTGACTCGTCTGTTCTGACTCGGAGTGAGTTGGGCGAGTCAGGTAGGACCAGTTCTACTGCCTGCGAATCCCTCAGCTTCAGGCTCGGAAACCTCCACAAGTACGTCGAGGGAGAGCACGTCGCCGCCGGTTGGCCTGCCTGGCTAAGCGCCGTCGCCGGAGAAGCCATCCACGGCTGGATTCCCCTCCGCGCCGACGCATTCGAGAAACTCGAGAAGATTGGTCAGGGTACTTATAGCAGCGTGTTCAGGGCGAGGGAGCTTGAGACGGGGAAGATAGTGGCGTTAAAGAAGGTCCGGTTCGACAATTTCGAGCCGGAGAGTGTTCGGTTTATGGCGCGGGAGATAACCATTCTGAGGAGGCTTCATCATCCCAACATCATAAAGCTGCAGGGCTTGATCACTTCCAGGTTATCATGCAGCATATACCTTGTTTTTGAGTACATGGAGCATGACATCACGGGCCTCTTGTCAAGTCCTCAGGTCAAATTTACCGAACCTCAGATTAAGTGCTATATGAAGCAGTTGTTGTCTGGTCTCCAGCATTGCCATTCCAGGGGTGTCATGCACCGGGATATCAAGGGATCCAATCTTCTGGTGAATAATGAAGGGATACTCAAGGTGGCTGATTTTGGATTGGCCAACTTCTCCAGTTCTGCCTACAGGCATCCCCTCACCAGTCGAGTTGTCACTTTGTGGTATCGGCCGCCGGAGCTTTTGCTGGGTTCAACGGATTATGGCCCTTCTGTTGATCTCTGGAGTGTTGGCTGCGTTTTCGCTGAGCTACTTGTTGGGAAACCTATACTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCGCCTGATGAATACTGGAAAAAGACCAGACTTCCTCATGCGACTTTGTTTAAGCCACAACAAGCATATGATAGTTGCCTCCGACAGTCCTTTAAAGATTTGCCTTCTTCCAGTGTAAATCTGCTGCAAACTCTTCTTTCCGTTGAACCATACAAGCGTGGGACTGCCGCATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTCATGCATGTGAGCCATCAAGCTTGCCGACGTACCCGCCTAGCAAGGAAATTGATGCAAAACACAGAGAGGAGTCAAGGAAAAAGGTCACTGGACGAGCTCGTGGAACTGAAAAAAGAAAGCCATCAAGAAAGTCCCTTGGATTCAATAAACTAACTCCAGCAGAGGATTTGGCAAGTCAAACTCAAGCTTCCCAAAAGGTCAATGGTAGATCTGTTTCCATCCTTCAAGAACAAAAGGCTAACACAGGTGAGGAGGAACAAAAGCCAGCTAGTGGTAAACTTGAAGATGCTTCCCATATGAAGAATTCATCTCAAGAAGATATTCCCTTTTCTGGGCCATTACAAGTTTCATCATCAAGTGGCTTTGCATGGGCAAAAAGTCGTAAAGATGACACTTCAATTCGATCCCACTGTCGAACTATTTCGAGAGGACATATTTTCAACCTGTCAGAAACTTCTACACTAAAATCAAGGAATAATTTGGATAACAGAAACCAGGAAAGTAAGGAGTCTTCTGGGAGGCGCACCAACTCTAGGGGCAGCGACCTACTTGACTTATCTAAGATTTCAATGCAGAATCCGTGGAATAGGTTTGATCGCCCAGATTCATTTGATGCTTCCGATGAGTACCATTCGCAAGAACTATCTATGGCACTTTATCATAGAGAAGATTCAGCATCGAAGAGAAGTAATCTGAGTTTTCAGGATCAAGGAGAGAAGGTTGAATATTCCGGACCCCTTCTATCTCAGATGCACACAGTTGATGAGCTCTTAGAAAAACATGAGCGTCATATCCGACGCACAGTTCGAAGATCATGGTTTCAAAGAGCTAAGAAGCATGGGAAGTAA	2034	0.4798	MGCVSSKQAVSVTPAIDHSGAFRPNAADFSDTNNKNNERTDSSVLTRSELGESGRTSSTACESLSFRLGNLHKYVEGEHVAAGWPAWLSAVAGEAIHGWIPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREITILRRLHHPNIIKLQGLITSRLSCSIYLVFEYMEHDITGLLSSPQVKFTEPQIKCYMKQLLSGLQHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSSSAYRHPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQAYDSCLRQSFKDLPSSSVNLLQTLLSVEPYKRGTAASALSSEYFKTKPHACEPSSLPTYPPSKEIDAKHREESRKKVTGRARGTEKRKPSRKSLGFNKLTPAEDLASQTQASQKVNGRSVSILQEQKANTGEEEQKPASGKLEDASHMKNSSQEDIPFSGPLQVSSSSGFAWAKSRKDDTSIRSHCRTISRGHIFNLSETSTLKSRNNLDNRNQESKESSGRRTNSRGSDLLDLSKISMQNPWNRFDRPDSFDASDEYHSQELSMALYHREDSASKRSNLSFQDQGEKVEYSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRAKKHGK	677

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip10g00106	677	Pfam	Protein kinase domain	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip10g00106	677	MobiDBLite	consensus disorder prediction	449	475	-	-
Aip10g00106	677	SMART	serkin_6	107	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip10g00106	677	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	2	670	-	-
Aip10g00106	677	CDD	STKc_CDK9_like	107	391	-	-
Aip10g00106	677	SUPERFAMILY	Protein kinase-like (PK-like)	101	396	IPR011009	-
Aip10g00106	677	PANTHER	CELL DIVISION PROTEIN KINASE	2	670	-	-
Aip10g00106	677	MobiDBLite	consensus disorder prediction	557	571	-	-
Aip10g00106	677	Gene3D	Phosphorylase Kinase; domain 1	95	189	-	-
Aip10g00106	677	MobiDBLite	consensus disorder prediction	395	510	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g00106	Aip-Chr10	963381	967795	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g00106	99	423	Core Cell Cycle Gene Families	AT5G10270	50.733	2.27e-114	351

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Aip10g00106		Pkinase	7.6e-69	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g00106	-		-	gmx:100803328	1168.68

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