Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00103 ATGGCTGCTCCGTCGTCTCCTTCTCCCTTCCACGACGCCCTTCCCGATGTCAATGACTATGTCTGGGAAAAAGAATCAGACGGATTGCCGTGGGACACACTTCGCCATGTTTACGAGCTTGTGCAGAGTGGCAATGAAGCATTTCGAGAGAATAGAATGGAAGAGGCAATCAGCTTTTATTCGCGAGCCAATAACATTAAATCTGGTGATATGGTCATCCTCGGCAATCGCTGTGCAGCTTATATTAGGATTAGTCAATATTTAAAGCATAGAACTCCATCGGCTTCGGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTGCAAAGTAATTCAGCTAATCCTTACATTTTAAAGGCCCATGCACTTCTTTTGTTGGAGAAATATGAGAAAGCCAGGGATGTTATTCTTTCCGGTCTACAAGTCGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCGAAATTTGGAAAGACTGCCATCTCATTCAACAAGGATGGATAGACATGCACAACCAGAGCGAAACGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGTGGACATTCCTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTTTGTGCAGGACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATCATAGAGAAGAACTTTCCTGAGGAGTATGCAGAACGGAAACAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGATGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTGAGTTGA 924 0.4329 MAAPSSPSPFHDALPDVNDYVWEKESDGLPWDTLRHVYELVQSGNEAFRENRMEEAISFYSRANNIKSGDMVILGNRCAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLVDLQSNSANPYILKAHALLLLEKYEKARDVILSGLQVDPFSNPLQASLRNLERLPSHSTRMDRHAQPERNDEFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00103 307 Gene3D - 277 307 IPR046336 -
Aip10g00103 307 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Aip10g00103 307 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 13 306 - -
Aip10g00103 307 SMART ring_2 195 232 IPR001841 -
Aip10g00103 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 273 IPR013083 -
Aip10g00103 307 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Aip10g00103 307 SUPERFAMILY RING/U-box 189 258 - -
Aip10g00103 307 SUPERFAMILY TPR-like 37 164 IPR011990 GO:0005515
Aip10g00103 307 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Aip10g00103 307 PANTHER RING FINGER PROTEIN 127 13 306 - -
Aip10g00103 307 Gene3D Tetratricopeptide repeat domain 35 173 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00103 Aip-Chr10 932729 935312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00103 193 242 C3H Transcription Factor Family AT2G42030 40.385 4.90e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00103 - - gmx:100802277 491.886