Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00087 ATGACAAATGATTCTGAACAACTTCGACAGATTGGAATTTGGGGCATGGGTGGCATAGGTAAGACAACCATTGCTCAACTTGTGTTTGACAAATTTTCTCACCAATATGAGGGCTGCTACTTCTTGGAGAATATAAGAGATGAACTGAAAAATAATCAGTTAAATTATTTAAGAGACGAAGTTGTTTCTAAGCTATTAGGGGAAGAAAATCACCATATAACTGGTGCAAGCAGGGCAAATTCCTCCACCATGAGGAGGCTAAGTAAGAAGAAGGTTCTCCTTGTGGTAGATAATGTGAATACTCCAAAGCTTCTAAGAGATTTTCTTGAACCAATTCACTTTGGGCCAGGGAGTAGAGTGATTGTAACTAGCAGAAATAAGCAAGTGTTTACTGCAGGAGTATTTCATGAAATACACCATGTCAAGGAGCTGAACTCTGAAGAATCCCTTGAACTCTTCTGCTTAAATGCCTTCAATGAAAGCCAACCCAAAAGGGGATTCGAAGAGCTATCTAGAGAGGCAGTTGCTATTGCCAAGGGTGTCCCATTAGCTTTAATAGTTTTTGGTTCATATTTCCATTCTAAAAGTAATGACATATGGAAATGTGCCTTAGAAAGATTCAAGAAGTATACTGATCCTGATGGGgaaattcaaagtgtgttgaggtttagttatgatgaattacatgacatagagaaaaaggtttttctagatattgcattctttttcAAAGGAGAAGATAAAGATTATGTCATAAGCCAGCTGGATGCTTGGAACTTTCATGGAGCTAGTGGAATAGCCTCTCTCCAAGAGAAAGCTCTTATAGCCATTTCAAAGGACAATAAAATACAAATGCATGATTTAATGCAAAGAATGGGTTGGGAAATCGTTCGTCAAGAATCTGCTAATCCCGGACGACGAAGCCGAGTGAATGATCCAGAGGAAGTGTATGACATATTGAAGAATAACAAGGGAAGTGATTCAGTGGAAGGCATACTGTTAGATTTATCTCAAATCGGAGAGGTAGCCTTGAATGTTGACAGCCTTAAAAAGATGCCTAATCTAAGATTAATCAAGGTTTACTCTCCATTGCCTATTGAGGTTCCTATGCAAATTAGATATTTTATACCACAGGATTTTCTCAGTGTGCTTTACAAAAGAATAAAAATGGATGACTTGACAGAAGAGTTATTGGAAGAATCTGGAAGCTTGAATCAATCATGTGATAATGAGGATATCGATGATGTCGTTGAAACTATCAAGGGAACTCAAGTAGATGGCATAAAAATTCTTGATACTATTATAGAGATGCATATTTTGGGAATGCCTAAATTAAACATGCCGATGCATGTGGAGCATCCTATGCCTGGTTTGCCGATAATGCAGGATTTGGTAAATGATACAACTCAGCCTCTGATGCTGTCGAAGTTGTCTAAGTTAGGGGGTGTTCATAAATTGGCAAATTACAATGAAAATGATGGAGTTCTGGTTTTAGCAACAAATGATCTAAGTAGATCAATGCCACAGCGGAATCCCAACATTGGATCTGCGGTGAAAGAGTTGATCAGCCTTGGAAGTGAGTTTCACGTGAAATCCACTCACCATCTTTTCATGGAAGGTTCCTCAGTTTCAAAGGGCTTGTCCTTGTCAACAAAGGAAATAAGATCAATAAATTCAACCTTTAACAGAACGGAAGCATTGAACTCCTCCGTGGAGCTCTTCAAGAATCTTGAATGCTCAGATGCTAAAGCTCTACAATATTATGCAGAGACTACAATGGAACTATTGAACTCCTCCACGGGGTGCTTCATTTCTCATGATTACTCAGATATTGATGATCTGCAACTTGAGACTACCCGTAAAGATGAGTTATCTTTTCTGAGATCTACAAACTATTACAGGCTTCCTAATTGCAGAGAGAATAAACATATTGGGAAACCGAAGCTTCTAGTCCTGTTTGATGGGCTACGGTATTCCGAACAAATGTCTTTCTTGGTTGTTGGTGGATCGAGCCTCCAATGGAGTTATTTATGGTGCATAAGTAATAATTCTCAGTTTATGCAAATTCCTGTTGGTCCTCAGTTAACGAATTGTGTACAGTTGTCTCTAGAAGTATTTCCAGGGAGTTTGCCTTTGCTTTTGAGCATCATGCATCTTCCTCCGCATCTTAAAAGCCTATCAGTGCATGATGGTAGAAGTTTTTGGCATAAAATAAAGCTTCCACCATTCATTCCAGACGTGCGTACTAGTGGCAGAATGCTCATGTGGCGGGAAAGTTTGCCATCGAAGATCAATCATCATGTGTATCTGAGATTGAGAGATCGTAACAATCTTCGATCTATATCAGAGCTTCCACCATCCATTCAATCCTTGGAAATTTCCAAATGCATTATGCTATTGCGGGATAGTTTGCCTTGGACCTTCAAGTATCTTTCTAGTATTGAAGACCTGACATTAAATGATTGTAACAGTCCTCGATCTATATCAGAGCTTCCACCATCCATTCAATACTTGGAAATTTTCAACTGCATTATGCCGGAGAGTTTGCCTTCGAACTTCAAGTATCTTTCTAGTCTTAAATACCTGACATTGAGATATTGTAACAATCTTCTATCTATATCAGAGCTTCCACCATCCATTCAATCCTTGGAAATTTTCAAATGCTTTATGCTGGATAGTTTGCCTTCGAACTTCAAGTATCTTTCTAATCTTAAAGACCTGACATTAAATAATTGTAACAGTCTTCGATCTATATCAGAGCTTCCACCATCCATTCAATCCTTGGAAATTTCCAAATGCATTATGCTCAAGAGTTTGCCTTCGAACTTCAAGTATCTTTTTAGTCTTAAAGACCTGACATTGAAAGATTGTAGCATTCTTCTATCTATATCAGAGCTTCCACCATCTATTCAATCCTTGAAAATTTCCAACTGCATTATGCTGGAGAGTTTGCCTTCGAACTTCAAGTATCTTTCTAGTCTTAAATACCTGACATTGAGATATTGTTACAATCGTCTATCTATATTAGAGCTTCCACCATCCATTCAATCCTTGGAAATTTCCAAATGCATTATGCTCGAGAGTTTGTCTTCAAACTTCAGGTATTTTTCTAGTCTTAAAGATCTGACATTGAGAGATTGTAGCATTCTTCTATCTATATCAGAGCTTCCACCATCCATTCAATCTTTGGAAATTTTCAACTGCCTTATGCTGGAGAGTTTGCCTTCGAACTTCAAGTATCTTTCTAGTCTTAAATACCTGACATTGAGATATTGTAACAATCTTCCATCTATATTAGAGCTTCCACCATCCATTCAATCCTTGGAAATTTCCAAATGCTTTATGCTGGATAGTTTGCCTTCGAACTTCAAGTATCTTTCTAATCTTAAAGACCTGACATTAAATGATTGTAACAGTCTTCGATCTATATCAGAGCTTCCACCATCCATTCAATCCTTGGAAATTTCCAAATGCATTATGCTCAAGAGTTTGCCTTCGAACTTCAAGTATCTTTTTAGTCTTAAAGACCTGACATTGAAAGATTGTAGCATTCTTCTATCTATATCAGAGCTTCCACCATCTATTCAATCCTTGGAAATTTCCAACTCCATTATGCTGGAGAGTTTGCCTTTGAACTTCAAGTATCTTTCTAGTCTTAAAGACCTGACATTGAGAAATTGTAACAATCTTTGGTCTATATAA 3702 0.3701 MTNDSEQLRQIGIWGMGGIGKTTIAQLVFDKFSHQYEGCYFLENIRDELKNNQLNYLRDEVVSKLLGEENHHITGASRANSSTMRRLSKKKVLLVVDNVNTPKLLRDFLEPIHFGPGSRVIVTSRNKQVFTAGVFHEIHHVKELNSEESLELFCLNAFNESQPKRGFEELSREAVAIAKGVPLALIVFGSYFHSKSNDIWKCALERFKKYTDPDGEIQSVLRFSYDELHDIEKKVFLDIAFFFKGEDKDYVISQLDAWNFHGASGIASLQEKALIAISKDNKIQMHDLMQRMGWEIVRQESANPGRRSRVNDPEEVYDILKNNKGSDSVEGILLDLSQIGEVALNVDSLKKMPNLRLIKVYSPLPIEVPMQIRYFIPQDFLSVLYKRIKMDDLTEELLEESGSLNQSCDNEDIDDVVETIKGTQVDGIKILDTIIEMHILGMPKLNMPMHVEHPMPGLPIMQDLVNDTTQPLMLSKLSKLGGVHKLANYNENDGVLVLATNDLSRSMPQRNPNIGSAVKELISLGSEFHVKSTHHLFMEGSSVSKGLSLSTKEIRSINSTFNRTEALNSSVELFKNLECSDAKALQYYAETTMELLNSSTGCFISHDYSDIDDLQLETTRKDELSFLRSTNYYRLPNCRENKHIGKPKLLVLFDGLRYSEQMSFLVVGGSSLQWSYLWCISNNSQFMQIPVGPQLTNCVQLSLEVFPGSLPLLLSIMHLPPHLKSLSVHDGRSFWHKIKLPPFIPDVRTSGRMLMWRESLPSKINHHVYLRLRDRNNLRSISELPPSIQSLEISKCIMLLRDSLPWTFKYLSSIEDLTLNDCNSPRSISELPPSIQYLEIFNCIMPESLPSNFKYLSSLKYLTLRYCNNLLSISELPPSIQSLEIFKCFMLDSLPSNFKYLSNLKDLTLNNCNSLRSISELPPSIQSLEISKCIMLKSLPSNFKYLFSLKDLTLKDCSILLSISELPPSIQSLKISNCIMLESLPSNFKYLSSLKYLTLRYCYNRLSILELPPSIQSLEISKCIMLESLSSNFRYFSSLKDLTLRDCSILLSISELPPSIQSLEIFNCLMLESLPSNFKYLSSLKYLTLRYCNNLPSILELPPSIQSLEISKCFMLDSLPSNFKYLSNLKDLTLNDCNSLRSISELPPSIQSLEISKCIMLKSLPSNFKYLFSLKDLTLKDCSILLSISELPPSIQSLEISNSIMLESLPLNFKYLSSLKDLTLRNCNNLWSI 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00087 1233 Pfam NB-ARC domain 3 209 IPR002182 GO:0043531
Aip10g00087 1233 PRINTS Disease resistance protein signature 10 25 - -
Aip10g00087 1233 PRINTS Disease resistance protein signature 86 100 - -
Aip10g00087 1233 PRINTS Disease resistance protein signature 178 192 - -
Aip10g00087 1233 PRINTS Disease resistance protein signature 809 825 - -
Aip10g00087 1233 SUPERFAMILY RNI-like 1057 1230 - -
Aip10g00087 1233 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 6 369 - -
Aip10g00087 1233 Gene3D Ribonuclease Inhibitor 1147 1233 IPR032675 -
Aip10g00087 1233 Gene3D Ribonuclease Inhibitor 526 1007 IPR032675 -
Aip10g00087 1233 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 369 IPR044974 GO:0006952
Aip10g00087 1233 SUPERFAMILY "Winged helix" DNA-binding domain 216 301 IPR036390 -
Aip10g00087 1233 Gene3D - 1 134 IPR027417 -
Aip10g00087 1233 Gene3D - 143 229 IPR042197 -
Aip10g00087 1233 Gene3D Ribonuclease Inhibitor 1008 1146 IPR032675 -
Aip10g00087 1233 SMART LRR_bac_2 1102 1122 - -
Aip10g00087 1233 SMART LRR_bac_2 1147 1167 - -
Aip10g00087 1233 SMART LRR_bac_2 1192 1212 - -
Aip10g00087 1233 SMART LRR_bac_2 922 942 - -
Aip10g00087 1233 SMART LRR_bac_2 967 987 - -
Aip10g00087 1233 SMART LRR_bac_2 1057 1077 - -
Aip10g00087 1233 SMART LRR_bac_2 1012 1032 - -
Aip10g00087 1233 SUPERFAMILY RNI-like 785 1093 - -
Aip10g00087 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 239 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00087 Aip-Chr10 805529 815908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00087 8 365 WRKY Transcription Factor Family AT5G45050 34.400 1.20e-51 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00087 - - aip:107619878 2399.39