Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip10g00086 | ATGGGAGGTGACAGTGCCGCAGAAAGGTCTACGGATTCAAAGGTCTCTGAACCCGTCAGCATCAACATTCGGTGTTCCAATGGTTCCAAGTTCTCGGTTCAGATTTGCCTCGATTCCACCGTCGGATCCTTCAAGGAAGTCATTGCTGGCAGTTGCGATATCCCAGCTGGTCAGCAGCGCCTGATTTACAAGGGTCGGATCCTGAAGGATGATCAGACCCTACGAAGCTATGGCTTGGAGGCAGATCACACCATCCATTTGGTTCGTGGCTTCACACCTTCCAATACAGGTGGGGGCACAAATACCAGTGGCACCAATACCGCCACAACTAATGCCAGAAGTACTGGTGCTGCTGAGGGTGGGGGCTTAGGAGGCCTTGGTCTTGGAGCTTCATTGTTCCCTGGATTAGGTTTGAATGGGATGGGTGGCAATAACCTATTTGGAGAGGGATTTCCGGATCTTGAGCAGATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATTATGAACACACCTGCTATGCAGAACCTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAGCAACCCGCAGATGCAGGAGCTCATGGATCGGAATCCCGAGTTAGCTCACATACTTAATGATCCAAGCACCCTCCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACCGACAGAGCAATGAGCAACATTGAAGCATCTCCTGAGGGATTTAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACTACGATGGCTGGAAACACAGGAGGCAACAATACACCACTTTCTGGGACTCAAGCCAGGGACCAATCAACAAATCCCTCAACTACTAGCTCCGAAGCAACTGCTGGTTCTCCATTACCCAATACTAACCCACTCCCCAATCCTTGGTCCTCAACGGGAACTGGTGGTGCCCAAAATAACAATAGAAGGTCAACCCCTGCTGGTGGGGATGCTAGGCCGCAGGCACCTACTGGCTTAGGAGGGCTTGGACTGCCGGATCTTCAAGGCATGCTGGGCGGCAATGCTATGCCAGATCCTGCTTTAATGGCCCAGTTAATGCAAAATCCAGCTATCTCAAATATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATGCTTGGAGCTAATGCTGATCAGCGTGGCATGCCTGATTTGAATTCTCTTAGAGAAGTGATGCAAAATCCAGAGTTCCTTCGCTTATTTTCTTCACCTGAGACACTGCAGCAACTCATGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAACAACAGCCACGGGAATCAGGTCAAACTGGCGGAGGCACTGGTCCTTTGAACAACTTGGCAGGTTTGGAGTTGTTATCAAGCATGTTCGGTGGACTTGGAACTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCGCCCGAGCAGTTGTATGCAACCCAGCTTTCTCAGCTTCAAGAAATGGGATTCTTCGACACGCAAGAGAACATAAGGGCCCTTATTGCCACATCCGGTAATGTTCATGCAGCAGTTGAACGACTTCTAGGAAACCCTGGTCAGTAG | 1623 | 0.4812 | MGGDSAAERSTDSKVSEPVSINIRCSNGSKFSVQICLDSTVGSFKEVIAGSCDIPAGQQRLIYKGRILKDDQTLRSYGLEADHTIHLVRGFTPSNTGGGTNTSGTNTATTNARSTGAAEGGGLGGLGLGASLFPGLGLNGMGGNNLFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMAGNTGGNNTPLSGTQARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNNRRSTPAGGDARPQAPTGLGGLGLPDLQGMLGGNAMPDPALMAQLMQNPAISNMMQSMLSNPQTLNQMLGANADQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQPRESGQTGGGTGPLNNLAGLELLSSMFGGLGTGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNPGQ | 540 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip10g00086 | 540 | Gene3D | - | 189 | 247 | - | - | |
Aip10g00086 | 540 | CDD | UBA_PLICs | 498 | 536 | - | - | |
Aip10g00086 | 540 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 492 | 537 | IPR015940 | - | |
Aip10g00086 | 540 | SUPERFAMILY | UBA-like | 494 | 536 | IPR009060 | GO:0005515 | |
Aip10g00086 | 540 | MobiDBLite | consensus disorder prediction | 443 | 462 | - | - | |
Aip10g00086 | 540 | SMART | CBM | 399 | 434 | IPR006636 | - | |
Aip10g00086 | 540 | SMART | CBM | 343 | 396 | IPR006636 | - | |
Aip10g00086 | 540 | SMART | CBM | 144 | 181 | IPR006636 | - | |
Aip10g00086 | 540 | SMART | CBM | 194 | 233 | IPR006636 | - | |
Aip10g00086 | 540 | Pfam | UBA/TS-N domain | 498 | 534 | IPR015940 | - | |
Aip10g00086 | 540 | MobiDBLite | consensus disorder prediction | 269 | 353 | - | - | |
Aip10g00086 | 540 | SUPERFAMILY | Ubiquitin-like | 13 | 105 | IPR029071 | - | |
Aip10g00086 | 540 | CDD | Ubl_Dsk2p_like | 19 | 91 | - | - | |
Aip10g00086 | 540 | Pfam | Ubiquitin family | 21 | 88 | IPR000626 | GO:0005515 | |
Aip10g00086 | 540 | SMART | ubq_7 | 19 | 90 | IPR000626 | GO:0005515 | |
Aip10g00086 | 540 | Gene3D | - | 6 | 102 | - | - | |
Aip10g00086 | 540 | ProSiteProfiles | Ubiquitin domain profile. | 19 | 88 | IPR000626 | GO:0005515 | |
Aip10g00086 | 540 | PANTHER | UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED | 3 | 540 | - | - | |
Aip10g00086 | 540 | MobiDBLite | consensus disorder prediction | 443 | 464 | - | - | |
Aip10g00086 | 540 | PANTHER | UBIQUILIN | 3 | 540 | - | - | |
Aip10g00086 | 540 | MobiDBLite | consensus disorder prediction | 269 | 335 | - | - | |
Aip10g00086 | 540 | SMART | uba_6 | 498 | 536 | IPR015940 | - | |
Aip10g00086 | 540 | Gene3D | - | 480 | 540 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip10g00086 | Aip-Chr10 | 797432 | 801867 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip10g00086 | 19 | 88 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 31.429 | 1.70e-06 | 45.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip10g00086 | K04523 | - | gmx:100776447 | 811.601 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip10g00086 | 10 | 797432 | 801867 | Aip10g00086 | 10 | 797432 | 801867 | ECH | |
Aip05g00320 | 05 | 3608152 | 3612022 | Aip10g00086 | 10 | 797432 | 801867 | PCT |