Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00082 ATGAAGAACACCTTGCTCACCACCCTCCTAGTCTTCAAGAACACCATTAGAGAAGAGTTGATCAGGAGTGTGCATGTATACCAAATAAAGGATGGGAAAGTAAGGGAAGTTGAAAGAGAGTTTGTGTTCTCAGAGAGTGGCTCCTATGGCGAAATGAGGTCCACACCAATCCTCAGATTGCAGAAGAAGCTTTGTGTTGCTGAAGTTTCTGAAGGGTACCAAAATGGAGTGTGGCTTTGTATCTTTTCCTTTCATAGAGATCACAAGCCTCAATTTTCCAGCATTCCAAACTTGCTTTTGCTCTCCAGAAACCTGAAGCTTCGGACAATCCCAACCTTGCTGAGAGACCTCCGTGTGATATACAAATTGGAAAAAGACAAAGATGTTCTATCAGACTCCACAGGGGAAGAACGCCAAGGAAACAACAAAGATTCCCAACCATTGAGAAAAGTGGTTCCCGTGTTAACTCAAGACCTGAATTTTCTTCCTTATGAAGATGACATGTCCGAATCACCGGACAACAAGCTAGATGTCCAAGCCTTGCCAGATGCAGATTCTGCAGAAAAGAAAAAACGTGCATCCAGTGACCGGGTAGCAAAAATAACGTTATCAGAGTTAGTCAAGTATTTTGATATACCGATTGTAGAAGCGTCAAGAAGGCTAAATGTTGGACTAACAGTTCTGAAGAGGAAATGCAGAGAATTCGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGAAATTCAGGAAGAAGCAAACAACCAAGAATCAGATGACAAGGCTGCAGCATTGGCGGCAATAGAGAAACGAAGGATGTTGGAGAGCGAAAAGGAAAACATAGAAAGGAAACCATTCATGGACATACAAAGTGAGACCAAGAAGTTGAGGCAGGACATCTTCAAGAGAAGGCATCGAGCGCGAGCTCAGGTCAAACTTAATTCGACTGTCTCCAGCAGCAGCAGTAGCAACAAAACTACCATTGAAACTTGA 1011 0.4313 MKNTLLTTLLVFKNTIREELIRSVHVYQIKDGKVREVEREFVFSESGSYGEMRSTPILRLQKKLCVAEVSEGYQNGVWLCIFSFHRDHKPQFSSIPNLLLLSRNLKLRTIPTLLRDLRVIYKLEKDKDVLSDSTGEERQGNNKDSQPLRKVVPVLTQDLNFLPYEDDMSESPDNKLDVQALPDADSAEKKKRASSDRVAKITLSELVKYFDIPIVEASRRLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHEIQEEANNQESDDKAAALAAIEKRRMLESEKENIERKPFMDIQSETKKLRQDIFKRRHRARAQVKLNSTVSSSSSSNKTTIET 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00082 336 MobiDBLite consensus disorder prediction 166 194 - -
Aip10g00082 336 Coils Coil 270 290 - -
Aip10g00082 336 Pfam RWP-RK domain 200 248 IPR003035 -
Aip10g00082 336 PANTHER PROTEIN RKD5 10 316 - -
Aip10g00082 336 Coils Coil 245 265 - -
Aip10g00082 336 ProSiteProfiles RWP-RK domain profile. 183 268 IPR003035 -
Aip10g00082 336 MobiDBLite consensus disorder prediction 317 336 - -
Aip10g00082 336 PANTHER PROTEIN RKD4 10 316 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00082 Aip-Chr10 760965 765246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00082 16 328 AtRKD Transcription Factor Family AT4G35590 46.037 1.14e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip10g00082 RWP-RK 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00082 - - adu:107475952 625.935