Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00080 ATGACCTTGGAAGGGGCAGAATATCTACACGTCAACTTCGCGTGGGCGCGTTGCTCATTATCCCGTGGCAACTTGGTAAATTCTCAAACCCCAAAAACCCCAAACTGGTTGAAGCGCAAGGGCGCTGGAACGGGAAGGAAGCAGGCTAAGAAAGCTAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTACAAGAAGGAGCACCCAAACAACAAATCCGTTGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAGGCTAAGGCAGAGAAAAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAAAAACAGGAGAGTAAGGGTGCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGATGATGATGATGAGGATGATGATGATGATGAGTGA 486 0.465 MTLEGAEYLHVNFAWARCSLSRGNLVNSQTPKTPNWLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERTMQAYNKKQESKGASEEDESDKSKSEVNDDDDDEDDDDDE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00080 161 MobiDBLite consensus disorder prediction 97 143 - -
Aip10g00080 161 MobiDBLite consensus disorder prediction 76 161 - -
Aip10g00080 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 58 127 IPR009071 -
Aip10g00080 161 SUPERFAMILY HMG-box 50 130 IPR036910 -
Aip10g00080 161 Gene3D High mobility group box domain 43 144 IPR036910 -
Aip10g00080 161 MobiDBLite consensus disorder prediction 144 161 - -
Aip10g00080 161 CDD HMGB-UBF_HMG-box 58 109 - -
Aip10g00080 161 Pfam HMG (high mobility group) box 58 127 IPR009071 -
Aip10g00080 161 Coils Coil 109 132 - -
Aip10g00080 161 SMART hmgende2 57 128 IPR009071 -
Aip10g00080 161 MobiDBLite consensus disorder prediction 24 64 - -
Aip10g00080 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 32 159 - -
Aip10g00080 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 32 159 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00080 Aip-Chr10 750229 751805 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aip10g00080 HMG_box 1.5e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00080 K25507 K22507 ahf:112797235 177.563