Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00074 ATGAGCAAAGATTGGGTTGTTATTGTGTTTGTGATATTTGTTTCAAGTAGTGGAATATTATTCAGCAATAATGTTTGTGCAAAACCACCTCCTAATGTTAACATAGGAGCAATTTTAGCTCTCAACTCAACCATTGGAAAGGTGGCAAAAATTGCTATAGAAGCAGCAGTGAATGATGTAAATTCAGATTCAACCATTCTCAGTGGAACCAAGCTTAACATCTCTATGCAAGACACAAAACTATCAACTGGATTTCTAGGAATCATTGACTCATTGCTATTGATGGAGAAAGACACTGCAGCCATAATTGGTCCACAATACTCAGTAATGGCACATGTAATCTCACACATTGCAAATGAGATGCAAGTTCCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTATTGATCAATTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGTGTTGCTGCATTAGGTGATAAGCTTGCCGAAAAACGTTGCAAGATATCACACAAAGCAGCCCTTAAACCTGATGATAGCAATGTCAACAAGGAAGAAATCAACAGTGCATTAGTTAAAATTGCTTTAATGGAATCTAGGGTTATAGTTCTTCACATTTACCCTTCTTTTGGCCTTGAAGTTCTTCACATTGCACAATCATTAGGCATGATGGGAAGTGGTTATGTGTGGATAGTCACTGATTGGCTCACAACTGCTCTTGATTCTGATCCATCATTGGCTACAACTTCAATCATGAATGATATGCAGGGTGTTATCACCTTGAGAATGCACACACCAGATTCAAGAATCAAGAGCAATTTTGAGTCTAGGTGGCCCAAACTAGCTCATCAAAATAATGATGAGGGTCCTTTTGGATTGAACATCTTTGGTTTATATGCTTATGACACTGTTTGGACCTTAGCTTATGCACTTGATGCATTCTTTAGAAGTGGTGGAACTTTGAAATTTTCAAATGATTCAAGTCTAAACACTTTAAGGGGTGATGGTGATACCCTGCATCTTGATACTATGGGAATGTTTCTTAATGGTAGCATGTTGCTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGTCCGATGATGTTTTCTCAAGATGGAAACCTAATGAATCCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATTTTGGTCTAATTCTTCTGGTCTTCACACTGGTGAACAAGTTCCAAACCATGGAAATTCAAGTGAATTAGGGCTTTATGGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCCAACAATGGAAAACAATTGAGAATTGGGGTGCCACTTAGGGTTAGCTACCATGAATTTGTGTCAAGAACTGAAGGCACTGATAAGTTTAGTGGTTATTGTATTGATGTGTTCACAGCTGCATTGGAATTGTTGCCTTATCCAGTCCCAAATAAGTTTATTCCATTTGGTGATGGTAAAACCAATCCATTGAATTCACTACTTCTTCAGAGGGTCACACTTGGTGAGTTTGATGCTGTGGTGGGGGACATTACCATTACCACAAACAGAACTAAGATTGTGGATTTCACACAACCATACATTGAATCCGGTTTAGTTGTTGTGGCACCAATAAGGAAGATGAAATCTAATGCTTGGGCCTTTCTAAGACCATTTACTCCAATGATGTGGCTTGTCACAGGAATGTTTTTCTTGGCTGTTGGGGCTGTTGTTTGGATTTTAGAACGTCGCTTGAATGATGATTTTAGAGGCACTCCTAGGAGACAATTTGTCACCATTATATGGTTTAGCTTCTCAACCTTGTTCTTTGCACATAGAGAGAAAACTGTTAGCACACTTGGGCGATTAGTCTTAATCATATGGCTGTTTGTGGTTTTAATACTGAATTCAAGCTACATTGCAAGCCTAACATCAATCCTCACAGTGGAACAACTCTCTTCCCCAATTAAGGGGATTGAAAGCTTAGCAACAAGCAATGAAAGAATTGGTTACTTGAGAGGATCATTTGCTGAGAATTATCTAACAGATGAACTCAACATACATAGGTCAAGGCTTGTTCCTCTCAATGACCCTTCAGAATATGAGAAGGCATTGAAGGATGGAGCTGCTAATGGTGGTGTTGCTGCAATCATAGATGAACGTGCATACATGGAGTTGTTCCTAGCAACTAGGTGTGAATTTGGGATTGTTGGTCAAGAGTTTACCAAGATGGGATGGGGCTTTGCCTTTCCAAGAGACTCTCCCTTAGCAATTGACATGTCAACAGCTATTCTAAAACTATCAGAGAATGGTGATCTTCAAAGGATTCATGACAAATGGCTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAGCAAGGCATAGATAGGCTTGAGACTAAGAGCTTTTGGGGTCTCTTCCTTCTTATTGGCATTGCATGCTTCATTGCTCTCCTTTGCCATGTTATTAGAATGACCTACCGTTTTAATAGGCATTATTCAAACAACACTACTAGTAATGACAACCTTGGAGGCTCTTCTTCTTCTTCTTCTTGTTCTTCTCGTATCAAATCTTTCTTTTCATTTGTCAATGGAAGAGAAGAGGAAGAAGAGATGGAAGATAAAAATGGGAAAAAGAGAAGGCGCAAAGATAATAGAGTGGTTCATGAAGTAGAGGTTTCACCATTGCATGAATCAAACGTTAGCATCCATGTTGAAAATGGTGCCTAA 2829 0.3917 MSKDWVVIVFVIFVSSSGILFSNNVCAKPPPNVNIGAILALNSTIGKVAKIAIEAAVNDVNSDSTILSGTKLNISMQDTKLSTGFLGIIDSLLLMEKDTAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIIDQFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRCKISHKAALKPDDSNVNKEEINSALVKIALMESRVIVLHIYPSFGLEVLHIAQSLGMMGSGYVWIVTDWLTTALDSDPSLATTSIMNDMQGVITLRMHTPDSRIKSNFESRWPKLAHQNNDEGPFGLNIFGLYAYDTVWTLAYALDAFFRSGGTLKFSNDSSLNTLRGDGDTLHLDTMGMFLNGSMLLQKILEVNRTGLTGPMMFSQDGNLMNPSYEIINVIGTGVRRIGFWSNSSGLHTGEQVPNHGNSSELGLYGVIWPGQTTQTPRGWVFANNGKQLRIGVPLRVSYHEFVSRTEGTDKFSGYCIDVFTAALELLPYPVPNKFIPFGDGKTNPLNSLLLQRVTLGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSNAWAFLRPFTPMMWLVTGMFFLAVGAVVWILERRLNDDFRGTPRRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLATSNERIGYLRGSFAENYLTDELNIHRSRLVPLNDPSEYEKALKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLETKSFWGLFLLIGIACFIALLCHVIRMTYRFNRHYSNNTTSNDNLGGSSSSSSCSSRIKSFFSFVNGREEEEEMEDKNGKKRRRKDNRVVHEVEVSPLHESNVSIHVENGA 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00074 942 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Aip10g00074 942 Pfam Bacterial extracellular solute-binding proteins, family 3 484 815 IPR001638 -
Aip10g00074 942 Gene3D - 51 407 - -
Aip10g00074 942 MobiDBLite consensus disorder prediction 900 926 - -
Aip10g00074 942 Gene3D - 464 583 - -
Aip10g00074 942 Gene3D - 149 432 - -
Aip10g00074 942 SMART GluR_14 475 816 IPR001320 GO:0015276|GO:0016020
Aip10g00074 942 PIRSF IGluLR_plant 2 939 IPR017103 -
Aip10g00074 942 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 912 - -
Aip10g00074 942 CDD GluR_Plant 472 814 - -
Aip10g00074 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Aip10g00074 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Aip10g00074 942 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Aip10g00074 942 PANTHER GLUTAMATE RECEPTOR 25 912 - -
Aip10g00074 942 Pfam Receptor family ligand binding region 51 417 IPR001828 -
Aip10g00074 942 SUPERFAMILY Periplasmic binding protein-like II 449 816 - -
Aip10g00074 942 MobiDBLite consensus disorder prediction 900 942 - -
Aip10g00074 942 Gene3D - 584 719 - -
Aip10g00074 942 SUPERFAMILY Periplasmic binding protein-like I 27 465 IPR028082 -
Aip10g00074 942 Gene3D - 730 821 - -
Aip10g00074 942 CDD PBP1_GABAb_receptor_plant 34 432 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00074 Aip-Chr10 677611 684826 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00074 27 929 Ion Channels AT1G42540 57.546 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00074 K05387 - gmx:100790502 1443.71