Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00071 ATGGAGAAAGGCACTGTGGCAATAATTGGTCCACAGTACTCAGAAATGGCACATGTAATCTCACACATTGCAAATGAGATGCAAGTTCCTCTCTTATCATTTGCAGCAACAGATCCTACACTCACTTCTCTCCAATTCCCATATTTTGTTAGAACAACACAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGATATTGTTAGTCACTTCCAATGGAGAGATGTGATTGCAATCTTCATTGATGATGATCATGGAAGAAATGGAGTCACTGCATTAGGTGATAAGCTTGCTGAAAAACGTTGCAAGATATCATATAAAGCACCCATTAAGCCAAATAATATTAGTCAAGAAGAAATAACCAATGCATTGATTAAAGTAGCTTTGATGGAATCTAAGGTAATAGTCCTACATTTGTTACCTGATTTTGGCTTAAGAGTACTTAAGATTGCTCAATCACTTGGCATGATCAAAAGTGGTTATGCATGGATAGTAACTGATTGGCTTTCTACAATATTAGATTCAAACCCTTCATTGTTATTGTCTACAAGCTCTACCATGAATGATATGCAAGGTGTTATCACCTTGAGAATGTACACACCAAATTCAGAAATTAAGAGAAACTTTATGTCTAGGTGGAAGACCAACCTAACCCATGTAAATGATGATCATCATTTGGGATTGAACATATTTGGTCTATATGCTTATGACACTGTTTGGACCTTAGCTTATGCACTTGATGCATTCTTTAGAAGTGGTGGAACTTTGAAATTTTCAAATGATTCAAGTCTAAACACTTTAAGGGGTGATAGTGATACCCTTCATCTTGATACTATGGGAGTGTTTCTTAATGGTGACATGTTACTTCAGAAGATTCTAGAAGTTAATCGAACCGGTTTAACCGGCCGAACAGAGTTTGCCCAAGATGGAAACCTAATACAATCATCATATGAGATCATTAATGTGATTGGAACTGGGGTTAGGAGGATTGGATTTTGGTCTAATTCTTTTGGCCTTCACACTGGTGAACAAGTTTCAAATGATGCAAATTCAAGTGAAGGGCTTTATAGTGTGATATGGCCTGGCCAAACAACACAAACACCTAGAGGTTGGGTTTTTGCTAGCAATGGAAGACATTTGAGAATTGGAGTACCACTTAGGGTTACCTACCATGAGTTTGTGTCAAGAATTGAAGGCACTGACATGTTGTTTGGTGGTTATTGTATTGATGTGTTTATTGCTGCTCTAAATGTGTTGCCTTATACAATTCCATACAAGTTTGTTCCATTTGGTGATGGTAGAACCGATCCCGTGGTGTCAGAACTTCTAGAACAAATCACAATTGGTGCCTTTGATGCCGTTATTGGGGATATTACTATTACTACAAACAGAAGTAAGATAGTGGATTTCACTCAGCCATATATAGAGTCAGGGAATGCTTTTTCTAATTGTTGGAGTTGTTGTGTGGATTTTAGAGCGGCCCTTTAA 1485 0.3764 MEKGTVAIIGPQYSEMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMSAVADIVSHFQWRDVIAIFIDDDHGRNGVTALGDKLAEKRCKISYKAPIKPNNISQEEITNALIKVALMESKVIVLHLLPDFGLRVLKIAQSLGMIKSGYAWIVTDWLSTILDSNPSLLLSTSSTMNDMQGVITLRMYTPNSEIKRNFMSRWKTNLTHVNDDHHLGLNIFGLYAYDTVWTLAYALDAFFRSGGTLKFSNDSSLNTLRGDSDTLHLDTMGVFLNGDMLLQKILEVNRTGLTGRTEFAQDGNLIQSSYEIINVIGTGVRRIGFWSNSFGLHTGEQVSNDANSSEGLYSVIWPGQTTQTPRGWVFASNGRHLRIGVPLRVTYHEFVSRIEGTDMLFGGYCIDVFIAALNVLPYTIPYKFVPFGDGRTDPVVSELLEQITIGAFDAVIGDITITTNRSKIVDFTQPYIESGNAFSNCWSCCVDFRAAL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00071 494 CDD PBP1_GABAb_receptor_plant 2 338 IPR044440 -
Aip10g00071 494 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016021
Aip10g00071 494 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016021
Aip10g00071 494 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016021
Aip10g00071 494 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016021
Aip10g00071 494 SUPERFAMILY Periplasmic binding protein-like I 2 370 IPR028082 -
Aip10g00071 494 Gene3D - 55 338 - -
Aip10g00071 494 Pfam Receptor family ligand binding region 3 323 IPR001828 -
Aip10g00071 494 Gene3D - 373 484 - -
Aip10g00071 494 PANTHER GLUTAMATE RECEPTOR 1 477 - -
Aip10g00071 494 SUPERFAMILY Periplasmic binding protein-like II 354 480 - -
Aip10g00071 494 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 477 - -
Aip10g00071 494 Pfam Bacterial extracellular solute-binding proteins, family 3 437 479 IPR001638 -
Aip10g00071 494 Gene3D - 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00071 Aip-Chr10 653894 656263 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00071 1 477 Ion Channels AT3G51480 52.818 5.63e-179 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00071 K05387 - ahf:114924018 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00071 10 653894 656263 Aip10g00071 10 653894 656263 ECH
Aip10g00071 10 653894 656263 Aip05g00255 05 2761309 2770287 ECH