Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00069 ATGATTAGAAATTGGGGTGTTGTGGTGTTGATTGTTCTTCTCTCCAATGGGTTCTGTTCAAATGGGGTTGGCTTGGATGATATTGATATTGATAATAATAATCACAGTAATAATACCACAATTCCTGATGTTGTAAATATCGGGGTTCTTTTCTCTTTCAATACAAGTGTTGGCAAAATTGTGAAAATCGCCGTAGAAGCCGCGGTTAAAGATGTAAATTCTGATCCATCAATTCTTGGTAAAACTCAGCTCAAGCTCTCACTTCAAGAAGATTCCAAATATAGAGGGTTCTTGAGCATTGCTGAGGCATTGCAGCTCATGGCAACACACACTGTGGCCATAATTGGCCCACAGACCTCCACAACAGCTCATGTCATATCTCACATCGCGAACGAGCTTCAAGTTCCCCTGCTGTCGTTTACAGCCACTGACCCCACCCTTTCTTCGCTTCAGTTCCCATTCTTCATTCGGACATCTTTTAATGATATGTATCAGATGACTGCAATAGCAGATCTTGTTAACTATTATGGTTGGAGGGAGGTTATTGCAGTCTATGGTGATGATGATCATGGGAGGAATGGAATTGGTGCCTTAGGGGACAAGCTAGCTGAGAGACGCTGCAAGATCTCGTTTAAAGCTCCTATGAGTCCTGAGGCAACCAGGGAGGAGATCACTGATGTGCTTGTTCAGGTAGCTCTGGCTGAATCGCGGGTTATAGTCCTTCACACAAGTACTACTTGGGGGCCGAAAGTGCTAAATGTGGCGAAATCTCTTGGAATGATGGAAAATGGTTATGTCTGGATAGCCACAACTTTTCTGTCTACCGGGATAGATATAAGTTCTCCACTTTCTTTGAGTGTAATGGATGACATTCAAGGAGTTATTGCGCTGCGAATGTATGTGCCGGATTCAAAGCTCAAGAGATCTTTCATTTCGAGGTGGAAAAACTGGACTAATGGCTCCCTTGGATTGAGTACTTATGCTATCTTTGCATATGATACTGTCTATGTTCTTGCTCATGCGCTTGCTGCATTTTTTAAACAAGGGAACCGCATTACCTTTTCATCTGATTCAAAGACATCTCTAATACATGGTGACAACATGCATCTTGATGCTGTGAAGATATTCAACGAAGGAAAACTGCTGCGAAAAAGTATCTACAAGGTTAACATGACCGGTGTAACAGGTCACTTCAAGTATACATCTGATGGAAACCTTGCAAATCCGGCATATGAAATCATCAATGTGGTTGGAACAGGGACTAAGAGGATTGGTTATTGGTCTAATCACTCTGGACTATCATCTGTAAGTCCTGAAGAACTTCATTCAAAGCCGGCTAGACATTCAAGTTCAAGTCAAAAGCTACTATCTGTGATTTGGCCAGGGGACACAACACAGAAACCTCGCGGTTGGGTTTTTCCAAACAATGGAAGGATGCTAAAAATTGGAGTACCAAAAAGGATCAGTTACCGCGAATTCGTCTCACAAGTAAAAGGCACTGATATGTTCAAGGGGTTCTGCATTGATGTCTTTCTTTCTGCAGTGAACTTGTTGCCTTATGCTGTCCCCTATAAGTTTATTTCGTACGGAGACGGTCACAGCAATCCTAGTAACACTGAACTTGTCCGTCTGATCACGACCGGTGTGTTTGATGCTGCTGTAGGTGACATTACAATTACCACAGAAAGAACAAAGATGGTGGATTTTACACAGCCATTCATCGAGTCCGGTCTAGTGGTAGTAGCATCAGTGAAGAAGACAGACTCAAATGCTTGGGCATTCTTGATGCCATTTACACCAATGATGTGGATTGTCACAGCTATCTTCTTCCTAGTTGTTGGTGCTGTTGTCTGGATTTTAGAGCATAGGCTCAATGATGATTTTAGGGGACCTCCCAAAAAACAGGTAGCCACAATTTTGTGGTTCAGTTTCTCAACCATGTTTTTTGCACATAGGGAAAACACAGTGAGCACTCTCGGTCGATTCGTGCTGCTTATATGGTTATTCGTAGTTCTCATAATCAACTCGAGTTATACAGCAAGCTTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCAATTAAGGGCATTGAAAGTTTGATAAACAACAATGAGCCTATTGGCTACTTGCAGGGTTCTTTCACTAAAGGTTATTTAGTCAACGAAATTGGCATCGATGCGTCGAGACTTGTAGCTCTAACAACACCAGAAGAATCTGCCACTGCTCTGGACAAAGGTCCCCATAAAGGTGGCATCGCTGCATATGTCGACGAACGCGCATACATAGAGCTGTTCCTTTCAAGCCGCTGCGATTTCAGCGTTGTTGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCGGTTGACCTGTCAACAGCCATTTTGGAGTTGGCTGAGAACGGCGACCTTCAACGGATCCACGACAAATGGCTTTTGCGCAGTGCTTGCCTGTCGCAAGGTGCGAAGCTCGAAGTGGACAGACTCAAGCTGAGGAGCTTCTGGGGTCTCTACCTACTCTGTGGCTTGGCATGTTTGATTGCTCTCTTTGTATATCTGATTCAAACCATGAAGCAATACAAGAAGCACTACACCGAAGACGACAAGTCGTCGTCCGGTCTAAAGTCCACGCCGTCGCGACTAAGGACTTTCCTTACATTTGTAGATGAAAAGGAAGACACAGTTAAGAGCCGCTCCAAGAGAAGGAAAACGGAGATGGCATCATTCAAAAGCACAAGTGAGGTTGGATCATCCAATAATGGATATTCAGAATCATCTTCTCAGAGAATTGAGTGTACTAATAATGAGTCATGA 2838 0.4352 MIRNWGVVVLIVLLSNGFCSNGVGLDDIDIDNNNHSNNTTIPDVVNIGVLFSFNTSVGKIVKIAVEAAVKDVNSDPSILGKTQLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTSFNDMYQMTAIADLVNYYGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMSPEATREEITDVLVQVALAESRVIVLHTSTTWGPKVLNVAKSLGMMENGYVWIATTFLSTGIDISSPLSLSVMDDIQGVIALRMYVPDSKLKRSFISRWKNWTNGSLGLSTYAIFAYDTVYVLAHALAAFFKQGNRITFSSDSKTSLIHGDNMHLDAVKIFNEGKLLRKSIYKVNMTGVTGHFKYTSDGNLANPAYEIINVVGTGTKRIGYWSNHSGLSSVSPEELHSKPARHSSSSQKLLSVIWPGDTTQKPRGWVFPNNGRMLKIGVPKRISYREFVSQVKGTDMFKGFCIDVFLSAVNLLPYAVPYKFISYGDGHSNPSNTELVRLITTGVFDAAVGDITITTERTKMVDFTQPFIESGLVVVASVKKTDSNAWAFLMPFTPMMWIVTAIFFLVVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLINNNEPIGYLQGSFTKGYLVNEIGIDASRLVALTTPEESATALDKGPHKGGIAAYVDERAYIELFLSSRCDFSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLRSACLSQGAKLEVDRLKLRSFWGLYLLCGLACLIALFVYLIQTMKQYKKHYTEDDKSSSGLKSTPSRLRTFLTFVDEKEDTVKSRSKRRKTEMASFKSTSEVGSSNNGYSESSSQRIECTNNES 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00069 945 CDD GluR_Plant 478 820 - -
Aip10g00069 945 Pfam Bacterial extracellular solute-binding proteins, family 3 537 820 IPR001638 -
Aip10g00069 945 MobiDBLite consensus disorder prediction 900 916 - -
Aip10g00069 945 PIRSF IGluLR_plant 7 945 IPR017103 -
Aip10g00069 945 Pfam Ligand-gated ion channel 821 853 IPR001320 GO:0015276|GO:0016020
Aip10g00069 945 MobiDBLite consensus disorder prediction 917 945 - -
Aip10g00069 945 Gene3D - 762 827 - -
Aip10g00069 945 SUPERFAMILY Periplasmic binding protein-like I 41 472 IPR028082 -
Aip10g00069 945 SUPERFAMILY Periplasmic binding protein-like II 455 822 - -
Aip10g00069 945 Gene3D - 479 590 - -
Aip10g00069 945 Gene3D - 63 408 - -
Aip10g00069 945 CDD PBP1_GABAb_receptor_plant 46 436 IPR044440 -
Aip10g00069 945 Gene3D - 161 433 - -
Aip10g00069 945 PANTHER GLUTAMATE RECEPTOR 30 931 - -
Aip10g00069 945 SMART GluR_14 481 822 IPR001320 GO:0015276|GO:0016020
Aip10g00069 945 MobiDBLite consensus disorder prediction 900 945 - -
Aip10g00069 945 Pfam Receptor family ligand binding region 62 418 IPR001828 -
Aip10g00069 945 Gene3D - 591 715 - -
Aip10g00069 945 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00069 Aip-Chr10 643911 647626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00069 42 911 Ion Channels AT3G51480 61.194 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00069 K05387 - gmx:100788917 1500.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00290 05 3144069 3148142 Aip10g00069 10 643911 647626 PCT