LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g00068	GCCATATGTTGCTCGTACACCTACCTTTTCAGATGATGGAGCAGTTACACTTGGATCCAAGAGAAGCACTTTGTTTGAAGTTGATGCTAAAACCGGAAGGATCATTCAAACCCATAGTATGTCTGATTCTGATAATTCTTCTACATCTTGGAGTGATGACAAGAAGAGTGATACAGATATCCTTATAACAAAGAAAAAGGATCTTGCTAATCCTACGGAGCTGAATTCGCCGGAGTTGCTACTCAAGATATTTAGGACAGATTATTCTCTTCGATCTGTTGGTCCTAGTTCAGGAGTAGTTTTGTGGACTATGACTGTATCCGAATTCGAGGCTGTATTATTATGCCAACATACTTCATTTGATGCCGATGATGAGTATGTTTCTGACAGTGAGCTCGGTTTTGCGATGCCATATCCATGTCAAGAGATCCAACCAGTCTTTCGCTTGCGTAAGAATTTTATACTGGAACCCTCAATCACTGAAAGGTTACCTGGTTCTGATCATGAAAACAGTATGCTTTTGATGCCTGCGTCAGATTTGATGCTTCCTTCACAAGCAAATTTTGAAAAATTAAATGTCGATGATGGTAATATGATGCTTCCTGTGCCAATACCAAATTCTTTGCCTTCCCCGAAACCAAAAATTGTCTATCCAAGCCGAATGCATGAATGGTCAACACCATTACGTTTTATGATGCTTATGGTTTTGGGCTTTGTCCTCTATACTCTAGTGGTTAAAAGTAAAGATACGCCAAAGGATCAAAACCAGTCTGAATCGAAAATTTTGCCTGCTAAGAAAAAGAAGACACGTAAGTCAGGAAAGAACAATGTAGCAGTTGACAAAAAGGAAAAACATCTGTCCTCCGAAGATGAGGATATGCTGATGCGAAAGGATCTCGACGTAGAAGCAGGCGGGTGGATGCAATTTAACCAAATTGACCAAGGTGTTGACGGACGCAGGGTTGGTAAACTGCTTGTGTCAAATAAAGAAATTGCTAAGGGAAGCAATGGCACCATTGTCTTTGAGGGAATATATGAAGGTCGGGCAGTTGCTGTCAAGCGTTTGGTCAAGACTCATCATGATGTAGCATACAAAGAAATCCAAAATCTGATTGTATCTGATCATCACCCAAACATTGTTCGATGGCATGGGGTAGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAACGATGTACATGCAGCTTGGATGATTTTATTCAAATTTATTCGGATATATCAGATAACCCTCTGCTTAGGAAGAACCAAGCTTTCAAGTCTTCTATTAAGGCCCAAATTGATATGGGGAAGGATAATATGCATGGTTTGTGGAAAGCCAATGGCTATCCATCACCTCTATTACTGAAATTGATGAGAGATGTCGTTTCTGGGATTGTTCATTTGCATGAACTAGGAATAATACATCGTGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAGATCCTTGTGCGCAAAGCTTTCTGATATGGGCATTAGCAAACGCCTCCCTGAAGATATGTCTGCTTTGGGTCATAATGCTACTGGGGCTGGCAGTTCAGGTTGGCAAGCACCAGAACAACTTGGTCAAGGACGCCAAACACGGGCCGTAGATTTATTTAGCTTAGGTTGTGTCCTCTTTTTCTGCATGACTGGGGGGAGACATCCATTTGGAGAACGGCTTGAACGCGATGTTAATATTGTGAAAAACAGAATGGATCTTTTCTTAGTGGAGTTCATTCCTGAAGCAGAAGATCTAGTTTCTAGTTTACTGAACCCTAACCCTGATATAAGGCCAAAGGCAATTGAAGTATTGCACCATCCATTTTTTTGGAGTCCAGAAATGAGACTGTCATTTTTACGCGATGCCAGTGATAGAGTGGAACTAGAAGATAGGGAGACTAATTCTGTTCTTCTGAACGCATTAGAACGCATTGCTACAGTCGCATTAGGTGCGAAATGGGACGAAAAGTTGGAACCAGCCTTTCTTACTAACATTGGTCGATATCGACGGTACAAGTATGATAGTGTTCGAGACTTGTTGCGCGTCATGAGGAACAAGCTAAATCATTATAGAGAGTTGCCTCAAGAAATCCAGGAACTTGTGGGAACTGTTCCGGAAGGATTCAATGAATACTTTGCAAGCCGATTCCCAAGGCTATTAATCGAAGTGTATAAAGTTATATCCAAGTATTGCAAAGAAGAACAATGTTTTGATAGGTATTTCAAGAACCTTAATTAG	2245	0.4058	PYVARTPTFSDDGAVTLGSKRSTLFEVDAKTGRIIQTHSMSDSDNSSTSWSDDKKSDTDILITKKKDLANPTELNSPELLLKIFRTDYSLRSVGPSSGVVLWTMTVSEFEAVLLCQHTSFDADDEYVSDSELGFAMPYPCQEIQPVFRLRKNFILEPSITERLPGSDHENSMLLMPASDLMLPSQANFEKLNVDDGNMMLPVPIPNSLPSPKPKIVYPSRMHEWSTPLRFMMLMVLGFVLYTLVVKSKDTPKDQNQSESKILPAKKKKTRKSGKNNVAVDKKEKHLSSEDEDMLMRKDLDVEAGGWMQFNQIDQGVDGRRVGKLLVSNKEIAKGSNGTIVFEGIYEGRAVAVKRLVKTHHDVAYKEIQNLIVSDHHPNIVRWHGVEYDQDFVYLALERCTCSLDDFIQIYSDISDNPLLRKNQAFKSSIKAQIDMGKDNMHGLWKANGYPSPLLLKLMRDVVSGIVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLPEDMSALGHNATGAGSSGWQAPEQLGQGRQTRAVDLFSLGCVLFFCMTGGRHPFGERLERDVNIVKNRMDLFLVEFIPEAEDLVSSLLNPNPDIRPKAIEVLHHPFFWSPEMRLSFLRDASDRVELEDRETNSVLLNALERIATVALGAKWDEKLEPAFLTNIGRYRRYKYDSVRDLLRVMRNKLNHYRELPQEIQELVGTVPEGFNEYFASRFPRLLIEVYKVISKYCKEEQCFDRYFKNLN	747

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip10g00068	747	Gene3D	KEN domain	615	747	IPR038357	-
Aip10g00068	747	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
Aip10g00068	747	SUPERFAMILY	Protein kinase-like (PK-like)	328	627	IPR011009	-
Aip10g00068	747	MobiDBLite	consensus disorder prediction	249	291	-	-
Aip10g00068	747	Pfam	Ribonuclease 2-5A	617	743	IPR010513	GO:0004540\|GO:0006397
Aip10g00068	747	SMART	serkin_6	325	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip10g00068	747	PANTHER	SERINE/THREONINE KINASE DOMAIN PROTEIN	2	743	-	-
Aip10g00068	747	SMART	PGNneu	676	730	-	-
Aip10g00068	747	ProSiteProfiles	KEN domain profile.	614	745	IPR010513	GO:0004540\|GO:0006397
Aip10g00068	747	ProSiteProfiles	Protein kinase domain profile.	325	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g00068	Aip-Chr10	639880	643236	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g00068	351	610	MAP Kinase Kinase Kinase	AT3G06030	26.894	9.75e-19	89.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Aip10g00068		Pkinase	1.2e-37	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g00068	K08852		-	gmx:100788389	1071.61

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