Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00062 ATGACTCGCATGCTAAGAATCCTCCAGTCCGCCACCGCCAACAACGCCACCACCACCACCGCCATAGCTGCTGCCGTGCCACCGGCCGAGGCAGCGTCAGTCGAGTCCGACTTCGTCGTCATCCTCGCTGCGCTGCTCTGCGCTCTCATCTGCGTCGTCGGCCTCATCGCCGTCGCACGATGCGCCTGGCTCCGCCGCGTCCCCGTGGCAGGCACCGGAGCATCTCCACATCAGGCACTCGCCAACCGTGGACTCAAGAAGAAGGTACTCAACTCGTTACCGAAATTCACCTACGTCGAGGGCGACGACGCCAGTAACGGTGCTGACGCCAGTAACGGTGCTGACGCCGGCGTCCGGAGGAAGTGGACAGCCTCATCGGAATGCTCTATTTGTCTGGCGGAATTCGCCGCCGGCGACGAGGTCAGGGTGCTTCCGCAGTGCGGCCATGGCTTCCACGTGGCATGTATTGACACGTGGCTGGGATCACACTCCTCCTGCCCGTCCTGCCGCGCCGTCCTGGCCGTTGGGAGATGCCAAAAATGCGGCCAGTTTCCGGCTGTTCCAAACGGCGCTACCGTAGTAGCAATTGCCGGCGAAACGGAATTAAAATCTGTCGTCGGCAACAGCAATGGTAACGCCGAGAGTAATATCCGGCATGCTAGCAATGATTTCTTGCCTTAA 681 0.6079 MTRMLRILQSATANNATTTTAIAAAVPPAEAASVESDFVVILAALLCALICVVGLIAVARCAWLRRVPVAGTGASPHQALANRGLKKKVLNSLPKFTYVEGDDASNGADASNGADAGVRRKWTASSECSICLAEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAVLAVGRCQKCGQFPAVPNGATVVAIAGETELKSVVGNSNGNAESNIRHASNDFLP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00062 226 SMART FANCL_C_2 124 178 - -
Aip10g00062 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 175 IPR013083 -
Aip10g00062 226 SMART ring_2 128 169 IPR001841 -
Aip10g00062 226 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Aip10g00062 226 Pfam Ring finger domain 127 170 IPR001841 -
Aip10g00062 226 SUPERFAMILY RING/U-box 89 174 - -
Aip10g00062 226 CDD RING-H2_PA-TM-RING 127 170 - -
Aip10g00062 226 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 214 - -
Aip10g00062 226 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 23 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00062 Aip-Chr10 575801 576939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00062 1 181 C3H Transcription Factor Family AT1G76410 55.135 2.87e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00062 - - adu:107487390 243.817