Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00042 ATGGGGTGGAGCAACAGTAACAACAATGAGATATGGAAGGCGCATGGGGCCATGGCCATGGTTCAGCTCTTCAGCGGTGGCTATCACGTAATTACCAAATTAGCCCTCAACGTTGGCGTCAACCAGATCGTCTTCTGCGTCTTCCGCGATCTCCTCGCCCTCTCCATCCTCGCCCCTCTCGCCTTCTTCCGTGAAAGACGCACGCGCCCTCCCCTCACCAAGCACCTCCTCTTCTCCTTCTTCTTTCTTGGATTAACCGGGATATTTGGGAACCATCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCTGCTGCAATACAGCCAGCCACTCCGGTTTTTACATTTCTCTTTGCTGTAATCATGGGCACAGAAAGAGTGAATTTGCTAAGATATGAGGGTTTGGCCAAGCTTGGTGGAACTCTTGTCTGTGTTTTTGGTGCTATTTTGATGGTTTTGTACCGAGGTCCGGCTGTCGTAGGGTATGCCGAAATGGACTTTGTTTCGCATAATGAAATCAGTGCTAAAGGTCAACCAGAGCCTTCTGGATGGTTGGTTACTGGTTTAATGGATCTTGGACTCGATCATTTTCATCTTGGGGTTCTGTGTTTCATAGGGAACACCTTGTGCATGGCTGCTTTTCTTGCCATTCAGGCACCAATACTAAAAAAATATCCTGCAAACTTATCTGTCATTGCATTTTCATACTTCTTCGGAGCTCTACTAATGGTGATCACATCAATGTTCGTGACAAATGAGGCGACCGACTGGATTTTGACGCAGTCTGAGACACTTGCTGTTATTTATGCTGGTGTTATCGCATCTGCCCTTAACTATGGACTGATTACATGGTGCAACAAGATACTAGGGCCAGCAATGGTTGCTCTTTATAATCCACTTCAACCTGGTGCTTCTGCTCTCTTGTCTAGAATTTTCCTTGGAAGTCCAATTTACATGGGAAGCATTCTTGGAGGTTCTTTGATTATTACTGGTTTGTATGCTGTTACATGGGCATCATTTAGAGAAAGACAAGCATCAAGTGGAGTTCTTCCTCATCATCATCATCATCATCATCATCATCATCATCATCATGGATCTTGGGTCTCTGATGACAAGAGTTCATATCAGAGAGGTCTCATCCTCCCCAGCTTAACTCCAAAGCCTTCTGATTAA 1182 0.4475 MGWSNSNNNEIWKAHGAMAMVQLFSGGYHVITKLALNVGVNQIVFCVFRDLLALSILAPLAFFRERRTRPPLTKHLLFSFFFLGLTGIFGNHLLFLIGLSYTNPTYAAAIQPATPVFTFLFAVIMGTERVNLLRYEGLAKLGGTLVCVFGAILMVLYRGPAVVGYAEMDFVSHNEISAKGQPEPSGWLVTGLMDLGLDHFHLGVLCFIGNTLCMAAFLAIQAPILKKYPANLSVIAFSYFFGALLMVITSMFVTNEATDWILTQSETLAVIYAGVIASALNYGLITWCNKILGPAMVALYNPLQPGASALLSRIFLGSPIYMGSILGGSLIITGLYAVTWASFRERQASSGVLPHHHHHHHHHHHHHGSWVSDDKSSYQRGLILPSLTPKPSD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00042 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 157 - -
Aip10g00042 393 PANTHER WAT1-RELATED PROTEIN 12 386 IPR030184 GO:0016021|GO:0022857
Aip10g00042 393 PANTHER WAT1-RELATED PROTEIN 12 386 - -
Aip10g00042 393 MobiDBLite consensus disorder prediction 353 368 - -
Aip10g00042 393 MobiDBLite consensus disorder prediction 352 374 - -
Aip10g00042 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 259 345 - -
Aip10g00042 393 Pfam EamA-like transporter family 20 138 IPR000620 GO:0016020|GO:0016021
Aip10g00042 393 Pfam EamA-like transporter family 202 339 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00042 Aip-Chr10 392469 395072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00042 97 350 Nodulin-like Gene Family AT5G45370 66.535 1.86e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00042 - - gmx:100809051 613.224