Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00019 ATGGATGAAAAAGCTAAGTCCTCAGATCATGTTGCTGTCACCATTGACCAGCACAATAACCATCCGAAAACCCCTTCCTCTTCCTCCGTGGACAACAAGCCCCCCAAACAACAACCCTTGAGGGTCAAAACCCTTAATCGGCTCAGCTTCTCGAAGCCCAAATCCAGAATCCTCGAGTACAATAACTACTATCCCCACCACCATCTCGGCAGAAAGCTATCAAGCATTTCGCAGGAGAACAACAACGACAATAATAATGAGGACGTGGACGAAGATGAAGAGGAAGAGGAGGAGTGGTGGGACGAAGAAGAAGAGATCGAGGAGGAGGGTGAGGGAGAGAGGAATAAGTTGCAGGAGAGGAGGAGGAGGAAGAAGGTGAGGTGGAGGGTAGTGGTGGAGTGGGTGGTGTTCCTGAGCATAGCAACATGCTTGGTGTGTTCGCTGGCAATAACGAGGATAAAGAAGATGCACATGGTGGGTTTGGAGATATGGAAGTGGTGCTTGATGGTGATGGTGACATTCAGCGGGAGGTTGGTGTCGGGGTGGGTGGTGGGGGTGACGGTGTTCGTGATAGAGAGGAACTTCATGCTGAGAGAGAAGGTGCTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCATGTGGCTAGGGCTGGTGCTTCTTTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAAGAACCACATGTTCCTGAACAAGGTGTTTCAGGGACTGGTGGCAGTGCTGGTTGGGGCCATCATATGGCTCGTCAAGATTGTTCTGGTGAAGATGCTGGCATCCTCTTTTCATGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACACTCTCTCAGGTCCGCCCATGGAGGACGCGGAGGAGATACTGCAGCAGCACCGCCTGCTCACGGGAGGCGGATCAAAGTCGATGCCTGCCAGGAGTAGGTTGAATAAGCTGAAGGAGAAGCAGGAGAGTGAATGGGAAGCTAGAAATTGCGCTCAGCGGATTTTCAACAACGTCGCCAAACCTGCTGCCAAGTACATTGAAGAGGAGGATTTGATGAGATTTCTGAAGAGGGTTGAGATACATACTATATTCCCTCTCTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGATCATCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAGGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTAGCAAGCGCGATAGTTAGTGTGATAATAATCATTGTGATCCTTTTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACGCAAATCGTGTTGATTGGGGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCATCCTTTCGACATTGGAGACCGCTGCGTCATTGATGGTGTTCATGTATATGTCGTAATCATCGTCATTTCATTATTATTCTTCTACTATATATATATACTTACTATATGTATGTGCATGCAGATGATTGTGGAAGAGATGAATATCTTGTCAACAGTGTTTCTCAGATACGACAACGAGAAAATATACTACCCTAATGCAGTTCTGCTGAATAAGCCAATCAGCAATTTCTACAGGAGTCCGGAGATGTGGGACTCAATTGATTTCACCATTGATGCTTCTACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATTTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGCTGTGCTTGTGTGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATCACTGAGCTCCTCTTGGAACTCAAAAAGATCTTTGAGATCCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCAGATGAACATGGAAAATAATGGCAGACTTGTCTTTCAATCATGA 2040 0.4667 MDEKAKSSDHVAVTIDQHNNHPKTPSSSSVDNKPPKQQPLRVKTLNRLSFSKPKSRILEYNNYYPHHHLGRKLSSISQENNNDNNNEDVDEDEEEEEEWWDEEEEIEEEGEGERNKLQERRRRKKVRWRVVVEWVVFLSIATCLVCSLAITRIKKMHMVGLEIWKWCLMVMVTFSGRLVSGWVVGVTVFVIERNFMLREKVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHMFLNKVFQGLVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHRLLTGGGSKSMPARSRLNKLKEKQESEWEARNCAQRIFNNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHVYVVIIVISLLFFYYIYILTICMCMQMIVEEMNILSTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDASTPMETIIALKKSIQIYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITQMNMENNGRLVFQS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00019 679 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 330 501 - -
Aip10g00019 679 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 330 501 IPR016688 -
Aip10g00019 679 Gene3D - 482 557 IPR023408 -
Aip10g00019 679 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 320 IPR016688 -
Aip10g00019 679 MobiDBLite consensus disorder prediction 84 110 - -
Aip10g00019 679 MobiDBLite consensus disorder prediction 12 35 - -
Aip10g00019 679 MobiDBLite consensus disorder prediction 1 48 - -
Aip10g00019 679 Pfam Mechanosensitive ion channel 423 652 IPR006685 GO:0016020|GO:0055085
Aip10g00019 679 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 499 672 IPR016688 -
Aip10g00019 679 MobiDBLite consensus disorder prediction 75 117 - -
Aip10g00019 679 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 320 - -
Aip10g00019 679 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 499 672 - -
Aip10g00019 679 PIRSF Memb_At2g17000 2 336 IPR016688 -
Aip10g00019 679 PIRSF Memb_At2g17000 324 676 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00019 Aip-Chr10 218912 224096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00019 8 668 Mechanosensitive Ion Channel Family AT5G12080 38.493 3.21e-164 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00019 K22048 - gmx:100813521 882.093