Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00008 ATGTCATCGTCGGAGGCGGGCTACAAGACGCCCGAAGCAGAATACAATACCCCACCGGCGTTAATAGCATTCACGTTAGCCATCCTAGTGTTATGCTTCATGGCCTTCAGCGTTGTGTACTTGTGCAAGTACTGCCTTGTAAGCGTCCTCCACTCTTGGGCCTTCCACCAGAGTTTCTCTGGTTCATTGCTTCGTCCTTCATCAACAAATAGGTCTTCCTCAATAGGCCTTGATCCTTCCATGCTTCAAACGTTCCCAACCTTTGTGTATTCCTCCGTAAAGGACCTCCGCAGCCTAGAATgtgccatttgcttgctcgaattcgaggacgacagcttgattcgcctcttgactatttgctgccatgttttccaccaagaatgcattgacctttggctttattcccacaagacttgccctgtttgccgcacAAACCTCGAGGAGCATAAATCAGGAGAAGGAGAAATCAGTGGTAGCAGTGGTGGTGCTGACATACGCATTGACATAATAACAGACATGGCCACCCAAGGTAGTGGGGGTCATCAGGGTACAGGAGGAGAGGATCATTCGTGTAGTGATGAACATTATCATAATAATAATGGGGTGCAGCAAGAACATAAGTTTGCAAGGTCACACTCAACGGGCCATTCCATAGTTTTTAGAGGAGAAGAAGAAGAAAATGATGATAAATATACCTTGAGGCTGCCGCAACACATTATAAGAGGGCGGCACCACTATTCTAAGAGTTGTACAAGTTTTCAAGAGATGCAGATGACGACTTCGACTAGGCCTTGTAGTAATTGTGGCTTTGTTGAATCTGTATCTAGCTGCTCCACCTCTCTCGCTCATATCCAAATTTCTTGA 864 0.39 MSSSEAGYKTPEAEYNTPPALIAFTLAILVLCFMAFSVVYLCKYCLVSVLHSWAFHQSFSGSLLRPSSTNRSSSIGLDPSMLQTFPTFVYSSVKDLRSLECAICLLEFEDDSLIRLLTICCHVFHQECIDLWLYSHKTCPVCRTNLEEHKSGEGEISGSSGGADIRIDIITDMATQGSGGHQGTGGEDHSCSDEHYHNNNGVQQEHKFARSHSTGHSIVFRGEEEENDDKYTLRLPQHIIRGRHHYSKSCTSFQEMQMTTSTRPCSNCGFVESVSSCSTSLAHIQIS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00008 287 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Aip10g00008 287 MobiDBLite consensus disorder prediction 177 196 - -
Aip10g00008 287 PANTHER RING FINGER DOMAIN-CONTAINING 7 256 - -
Aip10g00008 287 SMART ring_2 101 142 IPR001841 -
Aip10g00008 287 PANTHER RING-H2 FINGER PROTEIN ATL29 7 256 - -
Aip10g00008 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
Aip10g00008 287 CDD RING-H2_EL5_like 100 143 - -
Aip10g00008 287 Pfam Ring finger domain 100 143 IPR001841 -
Aip10g00008 287 SUPERFAMILY RING/U-box 81 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00008 Aip-Chr10 150701 151564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00008 19 249 Rapid Response to Elicitors AT2G35000 32.937 1.26e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00008 - - ahf:112732715 494.582