Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04029 ATGCCAGTTGCTAAACTCACGGCCTCTGGCTCTCCTGATGTCATGAAAACAGAAGACAGAAATGATTCTATAGATACCATCATCAGACAAGCAATTGGAAAGGAACCTTTCCTTTCTTTTCCTAGGGCTGGTGACAGCCCTGTACAATGGATTCAATTACTCCATGCTTTAGACCAGCAAGAACTTCCAGGGTGGCCTTTGCTTTCTCCTGTGAAAGTTCAGTTGCAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACCATAGAAGACATATGCGTGTACACCATCGATTGAAGAAGCTTGATAAGGATTCTAAGAAAAACCGAGATCTTCTAGGAGCTTATTGGGATAAGCTCTCTATAGAAGAGGCAAAAGAAGTTGTGTCATTCAAGAATGTAATGTTGGAGGAAGTTCCAGGGTCTTCAATTTTAAATGCTTTGGCAAGTCTTACTCAAAAACAAGGATTGTCTTCTCTTCCACAGTATTATCTTAGGGCTGGTTCTGCCCTTCTGGATATTGTCGAATCGAGGCCTTCAAGCTTTCCTATATCTTCCCAAGAGTTGTTCAGTATACTTGATGATTCCAGTGAAAAAACATTTTTGTGTGGGACAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACATAGTTTCTTGCACTAGTTTCTTGGTAGAGCAGAAATTGGTGAAGGCATGGCTTGCAGACAAAGAAGCTGAAGCATTGAAGTGTCAGAAGCAGCTAGTTGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAACAGAAGGGGAGGGAACTGCTCGAAGATGACATTGAAATTAAACGGAACATCAATAGCACAGGAGAGGCTGTACTATCTGCAGAAACATCTTTGGATACGTGTGTCTTTGAAGCACATAATTCTGATACATTTGCAGATCATGCTTCTTCACCACATGCATCTGCCTGTCACTTTCCTGACATTTATGAAGGTGCTGAAAGGGACTCAGGGTATGAATGTGACACTGATCAAAATATTGAGCGACAAACATCCCACAGACATAATCGTCGACGCATGATGGTTGCAAGACAGCAAGGACTGCCAAAATCACAGTGGGCTGTATCCAACTGTTTACATGCGAGCCCATATTCTCAATTATCAAAGCATGGAGTCATTCAGAGATATGGGACAAACCGGGATCAAAGAGTGACTTCTATTACTAATGGGATGAAAGTATGGAGTCGAAAGCCTAAACCGGATATTGATGGGATGGTTTCAAAAGCCAGACTGCAAAAAGAACCAGACAAGGTTAAGAATCATGAAGTATTGATAGGATCTATATCTGTAACTCTAAGCAATTGCAGCCAATCAGTGGGTAGCCTTGTGGCATCTCATGGTGATGATATTGTGGAGAATCCGACAAAGCAGTGTACTGTACAGGAGAAGCCAGTGAAACCTGATTCCTCCCAGAGTAGCAACAACCCATTAACAGTGAAGTTTTGGCGGCCAATTGACAAACATGGAACCAAAGACCCATTTCCACTTCAAAATGGTAGGGCTGGAGCTGAAGCTGATACTTATGAAAAACAGGATCAAACTTTGTCAGGTCAAAGTAGTTTAAGGGTGTATAGTATAGATCATAGTGATATTGGTTTCGGGAACAAGTTTCCCGATTTTGGTGCTAAAGCATATCCAAGAAGCCTTTTCTCCAGACATGCTGCCAAAGTCTTTCTTGCACAAAGTAATCTTTGCTACCCTACATTTTCAGAGTTCTATTCTATTGTACTGTCCCGTGTCACTAAAAATGACTTCCTTGGTCTTTAA 1887 0.4165 MPVAKLTASGSPDVMKTEDRNDSIDTIIRQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINHRRHMRVHHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILNALASLTQKQGLSSLPQYYLRAGSALLDIVESRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYVFDGEAGKIGLEPKNIVSCTSFLVEQKLVKAWLADKEAEALKCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKGRELLEDDIEIKRNINSTGEAVLSAETSLDTCVFEAHNSDTFADHASSPHASACHFPDIYEGAERDSGYECDTDQNIERQTSHRHNRRRMMVARQQGLPKSQWAVSNCLHASPYSQLSKHGVIQRYGTNRDQRVTSITNGMKVWSRKPKPDIDGMVSKARLQKEPDKVKNHEVLIGSISVTLSNCSQSVGSLVASHGDDIVENPTKQCTVQEKPVKPDSSQSSNNPLTVKFWRPIDKHGTKDPFPLQNGRAGAEADTYEKQDQTLSGQSSLRVYSIDHSDIGFGNKFPDFGAKAYPRSLFSRHAAKVFLAQSNLCYPTFSEFYSIVLSRVTKNDFLGL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04029 628 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Aip09g04029 628 Coils Coil 247 293 - -
Aip09g04029 628 MobiDBLite consensus disorder prediction 528 547 - -
Aip09g04029 628 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Aip09g04029 628 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04029 Aip-Chr9 146631270 146635128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04029 18 621 C2H2 Transcription Factor Family AT4G25610 44.026 3.44e-137 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g04029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04029 - - gmx:100799153 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04029 09 146631270 146635128 Aip09g04029 09 146631270 146635128 ECH
Aip05g03872 05 146925853 146931120 Aip09g04029 09 146631270 146635128 PCT