Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04025 ATGAGGATAGAGGAAAAGGTTGGGTTTTGCCTTGTGCTGAGTTGTGAAGTCATATATAGTAAACTTGAATCTTTTCTTCAATTGATGTTCAAAGCAAAAAGGGGTGGGAGGGATGGTGGTGGATGCACCTGCAAGTCAAAGGCTAATTGGTTTTCAATTGCTTGGGAAGATGACATGGTGCAATTGATGAATCATGAATGGAACACGTTCATCATTATTGGTCATTGGCTTTCATATTTATTAGGGTTTCAGAAGCTGCCACAGGAAATGGCTCCTAAGCAGCCAAGTTCGGGTCTGTTCGTCGGAATGAACAAAGGTCACATTGTCACCAAGAAGGAGTTGCCTCCACGTCCCAGGGATCGCAAAGGGAAAACAAGCAAGAGGGTGCACTTTGTAAGGAACCTAATCCGTGAGGTTGCTGGTTTTGCACCTTATGAGAAGCGTATTACTGAGTTGCTCAAGGTTGGAAAGGATAAGAGGGCGCTCAAAGTTGCTAAGAGAAAGCTTGGAACCCACAAGCGTGCTAAGAAGAAGAGAGAGGAGATGTCCACCGTTCTCCGCAAGATGAGGGCTGGTGGAGGTGGAGAGAAGAAGAAATGA 600 0.4533 MRIEEKVGFCLVLSCEVIYSKLESFLQLMFKAKRGGRDGGGCTCKSKANWFSIAWEDDMVQLMNHEWNTFIIIGHWLSYLLGFQKLPQEMAPKQPSSGLFVGMNKGHIVTKKELPPRPRDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSTVLRKMRAGGGGEKKK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04025 199 Gene3D 60S ribosomal protein L36 89 194 IPR038097 -
Aip09g04025 199 PANTHER 60S RIBOSOMAL PROTEIN L36 87 199 IPR000509 GO:0003735|GO:0005840|GO:0006412
Aip09g04025 199 MobiDBLite consensus disorder prediction 168 199 - -
Aip09g04025 199 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 87 199 - -
Aip09g04025 199 ProSitePatterns Ribosomal protein L36e signature. 144 154 IPR000509 GO:0003735|GO:0005840|GO:0006412
Aip09g04025 199 MobiDBLite consensus disorder prediction 176 199 - -
Aip09g04025 199 Pfam Ribosomal protein L36e 97 190 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04025 Aip-Chr9 146603516 146605065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04025 90 199 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 80.357 1.38e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04025 K02920 - vvi:100262717 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03868 05 146906850 146908495 Aip09g04025 09 146603516 146605065 ECH
Aip09g04025 09 146603516 146605065 Aip09g04025 09 146603516 146605065 ECH