Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04017 ATGGTGAGTCAGAGGCAGCGACTTGCACGGAAGCGCTTCAAAGAGGAGAACCCTGAGCTCTTTCCCAAGCCCGAGCCCACGCCTCCCAAGGACCCTGACAAAAAGAAGAAGAAGAAGAAGAGCAACACATTTAAGAGCAGCTCCATAAAACGCAGAAGCGATGGCTCCGAAGAACTCGGCGTCTCTAAGAAGCCTTTCAAGAGCAATTACCGAAAGCACCCTCTCAGAGTCCCCGGCATGAAGCCCGGTGACACCTGCTTCATCTGCAAGGCCGCCGACCATATTGCCAAGTCTTGTCCTCAAAAAGCTGAATGGGAGAAGAATAAGATATGCTTGCGGTGTCGACGGCGTGGTCACCGAGCTAAGAATTGCCCTGAAGTTCAAGTTGGTGCCAAGGATGACAAGTATTGTTACAATTGTGGAGAAACTGGTCATTCACTTGCAAATTGTCCCCACCCTGTTCAAGAAGGAGGGACAAAGTTTGCAGAGTGCTTTGTCTGTAAACAGCAAGGACACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATCTATCCTAAGGGTGGTTGTTGTAAAATATGTGGTGGCGTGACACATTTGGCAAGGGATTGTCCCGAAAAAGGGAAGAAAGCTCCTTTTGCTGCTAATGGGCCTGCTGATGGATCAATGAGACTGAGAAATGAACAGAGGCCTTGTGGAACGATAACCAAATTTGTGAGCGGGGATGACATTGAGGATGACTTCATGACAGATGACATAAATAACAGAGACAAGGACAAGTCCTCTAAGTCCAAAGACGGTCAAGCAAAACCAAAGAATAAGGGTCCTAAAGTTGTGAACTTCAGCTAA 849 0.4759 MVSQRQRLARKRFKEENPELFPKPEPTPPKDPDKKKKKKKSNTFKSSSIKRRSDGSEELGVSKKPFKSNYRKHPLRVPGMKPGDTCFICKAADHIAKSCPQKAEWEKNKICLRCRRRGHRAKNCPEVQVGAKDDKYCYNCGETGHSLANCPHPVQEGGTKFAECFVCKQQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPEKGKKAPFAANGPADGSMRLRNEQRPCGTITKFVSGDDIEDDFMTDDINNRDKDKSSKSKDGQAKPKNKGPKVVNFS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04017 282 MobiDBLite consensus disorder prediction 1 62 - -
Aip09g04017 282 SUPERFAMILY Retrovirus zinc finger-like domains 132 181 IPR036875 GO:0003676|GO:0008270
Aip09g04017 282 ProSiteProfiles Zinc finger CCHC-type profile. 137 151 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 MobiDBLite consensus disorder prediction 8 32 - -
Aip09g04017 282 Gene3D - 79 131 - -
Aip09g04017 282 ProSiteProfiles Zinc finger CCHC-type profile. 164 179 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 Gene3D - 132 184 - -
Aip09g04017 282 MobiDBLite consensus disorder prediction 245 282 - -
Aip09g04017 282 MobiDBLite consensus disorder prediction 251 272 - -
Aip09g04017 282 PANTHER OS04G0555800 PROTEIN 1 281 - -
Aip09g04017 282 ProSiteProfiles Zinc finger CCHC-type profile. 111 126 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 SMART c2hcfinal6 110 126 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 SMART c2hcfinal6 85 101 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 SMART c2hcfinal6 190 206 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 SUPERFAMILY Retrovirus zinc finger-like domains 79 128 IPR036875 GO:0003676|GO:0008270
Aip09g04017 282 Pfam Zinc knuckle 136 152 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Aip09g04017 282 Pfam Zinc knuckle 85 101 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04017 111 207 C2H2 Transcription Factor Family AT5G20220 29.825 1.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04017 - K17578 aip:107616096 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04017 09 146510463 146513058 Aip09g04017 09 146510463 146513058 ECH