Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04010 ATGGGAAAAGCACCTTGTTGTGACAAACATGGAGTGAAGAGGGGATCTTGGACACCTGAAGAAGATGAGGCTTTAGTTGAGCATATCAAGAAGCATGGAGAAGGAAGTTGGCGCACTCTCCCCAAACATGCAGGACTACAGCGATGTGGAAAAAGTTGTAGGCTGAGGTGGATTAATTATCTAAGACCTGGCATTAAGCGTGGCCCATTTACTTCTGAAGAAGAGACTAATATCATTCAACTTCATGCCTTGCTTGGCAACAGGTGGGCTGCTATAGCTTCTCAACTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACCCATCTAAAGAAGAATCTTCATCACCACTCCGGAGGGACTAAACAACCTTGTCTCAGCCCTCATGCAGGGATTGTCAAGTCGGAATCTCCTTCGACTCGGCACATGGCTTCAACACCATCATCATCATCAAAATTGGAGTCATGTTCAGATGCCTCGTTGCATTTGAAAAACACTGTTCAAGAACAAATAAGTAGCTGCAAACCAAAGCTTGAATATGACACAGGTGGATCAGATTCCGGCAACTATGAGTACCTTGATACTTCTGATTCTGCATTCAAACAATATCTGGATATGCCTGATGAAGATATAGAATTCTTGGACCACACTGACAGTTTCCTGAACCCTCCTGATGATGATGATGAGGAGGATGATAGATGTGACTAA 714 0.437 MGKAPCCDKHGVKRGSWTPEEDEALVEHIKKHGEGSWRTLPKHAGLQRCGKSCRLRWINYLRPGIKRGPFTSEEETNIIQLHALLGNRWAAIASQLPGRTDNEIKNYWNTHLKKNLHHHSGGTKQPCLSPHAGIVKSESPSTRHMASTPSSSSKLESCSDASLHLKNTVQEQISSCKPKLEYDTGGSDSGNYEYLDTSDSAFKQYLDMPDEDIEFLDHTDSFLNPPDDDDEEDDRCD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04010 237 CDD SANT 69 112 IPR001005 -
Aip09g04010 237 CDD SANT 16 61 IPR001005 -
Aip09g04010 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip09g04010 237 MobiDBLite consensus disorder prediction 115 158 - -
Aip09g04010 237 Gene3D - 14 66 - -
Aip09g04010 237 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip09g04010 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip09g04010 237 MobiDBLite consensus disorder prediction 217 237 - -
Aip09g04010 237 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 179 - -
Aip09g04010 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aip09g04010 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 179 - -
Aip09g04010 237 Gene3D - 69 133 - -
Aip09g04010 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip09g04010 237 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip09g04010 237 SMART sant 66 114 IPR001005 -
Aip09g04010 237 SMART sant 13 63 IPR001005 -
Aip09g04010 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip09g04010 237 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04010 Aip-Chr9 146479458 146480940 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04010 1 157 MYB Transcription Factor Family AT3G61250 66.038 4.03e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g04010 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04010 K09422 - gmx:100807142 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03818 05 146422379 146423796 Aip09g04010 09 146479458 146480940 ECH
Aip09g04010 09 146479458 146480940 Aip09g04010 09 146479458 146480940 ECH