Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g04008 ATGGGGTTGCAGCCACTGGAAAAAGCAAAACCAAAATACAAGAAGGGTTTATGGTCACCTGAAGAGGACAATAAGCTCAAAAACCACATTGTAAAGCATGGTCATGGCTGCTGGAGTTCTGTTCCTATTAAGGCAGGTTTACAAAGGAATGGAAAAAGTTGCAGACTGAGGTGGATTAACTATCTAAGGCCAGGATTGAAGAGGGGCTTGTTCAGCAAACAAGAGGAGGAGACAATCCTCACCCTTCACCAGATGCTAGGCAACAAGTGGTCTCAGATAGCACAAAATTTGCCGGGAAGAACTGACAATGAGATAAAGAACTATTGGCATTCATATTTGAAAAAGAGAGTGATGTCCAATGCTAAGGAAATGGAATCTAATGAACAAGTTCAGTATGCTACCTCAAGCTCAGAAACCATGGATTCTTCTTCACATGCTGTCCAGAATCTTGCAACACAAGGCAAACAAAATACCTATAGCTTCACCAATGAGGCTTGTCAAAGCTCCCCCATACCAAAACTTCTATTTGCTGAGTGGCTTACACTTGATCATGTGCAATGTGGTGGCAACTCTGCTAATTCATATGATGAATCTTTGGCTTTGAAGAATGGATTTGACAGTCAAATTTCGTCTTTTCAAGAATCTGCTACAGTACATGACCCTATGTCACAAGGACCCTTTGGAGGAGATTATCATAATAATAGTCTAGCTCATAGTTCAGCCGAAGAGATGTTCAATTCACAGCTTAAGTTTGGAACAACAATGGTGGAAAATGGATTCATCCAATGTATACCTGGGGTTGAATTTAGTGCCAATTTCAACATGAGCAATGATACGATGTATATCTATGATAATAGCATTATTTCCACGGCAGCTCAAAATGGAATGTAA 891 0.4029 MGLQPLEKAKPKYKKGLWSPEEDNKLKNHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGLFSKQEEETILTLHQMLGNKWSQIAQNLPGRTDNEIKNYWHSYLKKRVMSNAKEMESNEQVQYATSSSETMDSSSHAVQNLATQGKQNTYSFTNEACQSSPIPKLLFAEWLTLDHVQCGGNSANSYDESLALKNGFDSQISSFQESATVHDPMSQGPFGGDYHNNSLAHSSAEEMFNSQLKFGTTMVENGFIQCIPGVEFSANFNMSNDTMYIYDNSIISTAAQNGM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g04008 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aip09g04008 296 CDD SANT 18 62 IPR001005 -
Aip09g04008 296 CDD SANT 71 113 IPR001005 -
Aip09g04008 296 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aip09g04008 296 PANTHER MYB DOMAIN PROTEIN 55 1 154 - -
Aip09g04008 296 PANTHER MYB DOMAIN PROTEIN 55 157 275 - -
Aip09g04008 296 Gene3D - 70 142 - -
Aip09g04008 296 SMART sant 67 115 IPR001005 -
Aip09g04008 296 SMART sant 14 64 IPR001005 -
Aip09g04008 296 Gene3D - 15 67 - -
Aip09g04008 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip09g04008 296 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aip09g04008 296 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aip09g04008 296 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aip09g04008 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip09g04008 296 PANTHER MYB TRANSCRIPTION FACTOR 157 275 - -
Aip09g04008 296 PANTHER MYB TRANSCRIPTION FACTOR 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g04008 Aip-Chr9 146474285 146475925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g04008 8 205 MYB Transcription Factor Family AT3G48920 53.000 4.38e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g04008 Myb_DNA-binding 6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g04008 K09422 - gmx:778167 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g04008 09 146474285 146475925 Aip09g04008 09 146474285 146475925 ECH