Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03987 ATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGTCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCATCAGAAGACCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTTATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGACGACAGGCGAGGTGGACATAGTCCTGGGAGAGGTCATGATCGTCAGCGTGACAGGAGCCGTGATGGAAGGCGGTCACCCAGTCCATATCACAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGCAGTCCTGACTATGGCCGAGGCCGCAGCCGTAGTCGTAGCCATAGTCCCCTTCGAAGAGAGCAGCAAGTTAGTCCTGCTTATGGGCGTAGAAGCGCTAGTCCATATGGAAGACAGAGGGATGGCCCTGATCCTTCCCGTGGGTCTAGCAGAAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGGTCCTAGTCGAAGTCCTTATGATACTCAGAAGGCTAGCCCTGTAAATGGCCCCGAGACCAGGGATAGTCCCGATGGAAAAGGGAACCCTAGCCCTTACAATGGTTATAAAGGAAGCCCAGGAAGCCCAAACACGGGGCCTGAACCAAGGGATAGCCCCAACTATAGTGGTCCTGAAAGTCCCATGCATGAAGCATATCACAGTCAGTCGCCCCCTGCAGAAGAATGA 1125 0.496 MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGIRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGHSPGRGHDRQRDRSRDGRRSPSPYHRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSHSPLRREQQVSPAYGRRSASPYGRQRDGPDPSRGSSRSPYHKERGRADHGISPSHSPDGRETSPQNGRGPSRSPYDTQKASPVNGPETRDSPDGKGNPSPYNGYKGSPGSPNTGPEPRDSPNYSGPESPMHEAYHSQSPPAEE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03987 374 SMART rrm1_1 95 161 IPR000504 GO:0003723
Aip09g03987 374 SMART rrm1_1 3 70 IPR000504 GO:0003723
Aip09g03987 374 PANTHER BNAC08G47240D PROTEIN 4 305 - -
Aip09g03987 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Aip09g03987 374 SUPERFAMILY RNA-binding domain, RBD 75 172 IPR035979 GO:0003676
Aip09g03987 374 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Aip09g03987 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Aip09g03987 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Aip09g03987 374 MobiDBLite consensus disorder prediction 287 316 - -
Aip09g03987 374 MobiDBLite consensus disorder prediction 267 286 - -
Aip09g03987 374 MobiDBLite consensus disorder prediction 167 235 - -
Aip09g03987 374 CDD RRM1_AtRSp31_like 2 73 - -
Aip09g03987 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 165 IPR000504 GO:0003723
Aip09g03987 374 Gene3D - 79 201 IPR012677 -
Aip09g03987 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 305 - -
Aip09g03987 374 Gene3D - 1 78 IPR012677 -
Aip09g03987 374 MobiDBLite consensus disorder prediction 167 374 - -
Aip09g03987 374 CDD RRM2_AtRSp31_like 95 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03987 Aip-Chr9 146309430 146312465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03987 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 6.04e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03987 K12893 - gmx:100781534 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03987 09 146309430 146312465 Aip09g03987 09 146309430 146312465 ECH