Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03985 ATGAGCCGCCATAGGAACCCAGCACAAACTTGCCCTCCCACCATAATACCACATCAACTCCCCTACGGCTATGGCTATGTACCATCACCACCAGCAGCCGCGCCTCCAACTTCCCACTCCGGCACCATGCGCTACAGGGGCACGCGTCTCCGAAGTGGGAAGTGGGTGTCGGAGATAAGGTTACCACGTACCACGAAGCGCATTTGGCTGGGGACATACGCATCTCCTGAGATGGCTGCTGCTGCTTACGATGCTGCTACTCTTGCATTGAGGGGCCCCGAAGCCCATCTCAACTTCCCCAATTTCATACTCTCTTACCCTATTCCTGCTTCATTCTCCGATGCTGATATTCGCGCTGCCGCTGCCGTCGCTGCCTCCTTCGTCGCTCAGTATCGGACTACCACCGAGGCGCCACCAGCGATTACTACTTCTGCTGCTGCTGATAGCTATTCCTACAACAGTAGTATCGGACAAGTAGAAGGGATGATAGGAGATTATTTTGATGAGGATGAGCTGTTGAATATGCCGAGTGTGATCCAAGACATGGCCAGAGGACTGCAGATTAGCCCCCCAAGGATGCCTTCTTTCTACTCCGATGATTCCTCCGACGACATTTATTCGGACCTGTATACCCTTTGGTAA 642 0.5327 MSRHRNPAQTCPPTIIPHQLPYGYGYVPSPPAAAPPTSHSGTMRYRGTRLRSGKWVSEIRLPRTTKRIWLGTYASPEMAAAAYDAATLALRGPEAHLNFPNFILSYPIPASFSDADIRAAAAVAASFVAQYRTTTEAPPAITTSAAADSYSYNSSIGQVEGMIGDYFDEDELLNMPSVIQDMARGLQISPPRMPSFYSDDSSDDIYSDLYTLW 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03985 213 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Aip09g03985 213 SUPERFAMILY DNA-binding domain 45 101 IPR016177 GO:0003677
Aip09g03985 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 39 206 - -
Aip09g03985 213 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Aip09g03985 213 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Aip09g03985 213 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Aip09g03985 213 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Aip09g03985 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 206 - -
Aip09g03985 213 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Aip09g03985 213 Pfam AP2 domain 45 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03985 Aip-Chr9 146264744 146265493 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03985 45 213 AP2-EREBP Transcription Factor Family AT5G52020 47.429 3.43e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip09g03985 AP2 5.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03985 - - aip:107612168 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03985 09 146264744 146265493 Aip09g03985 09 146264744 146265493 ECH