Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03982 ATGGATGATGGTAACAACCCTCTTCCTCCTCCGATACAAATCCCACCAGCCACTACTCCAGCCCCAACCTCATCATCCTCTTCCCCCTCTTCTGCCGTGCGGTACCGGGGAACACGCTGCCGGAGTGGGAAGTGGGTGTCGGAGATAAGGGAGCCACGCAAGACGACGCGCATTTGGCTGGGGACATACCCAACACCTGAGATGGCTGCTGCTGCCTACGATGTTGCTGCTCTTGCCTTGAAGGGTCCCGATGCGCCTCTCAACTTCCCCGATTCCGTACAATCTTACCCTATTCCTGCCTCATTGTCTCCTCCTGATATTCGCGCCGCAGCCGCCGCCGCCGCTCAGGCGAGGCTTCCGAGGCCACCGCAGAACCCTCTAGAAGGTAGTAGTAGCGGTGGTGGTGGTAACGATAACGTTATTGTTGAAGGGTCTTGTTCCAGTTTGAGTACTGAAGAACAAGGAGGGATGATGGTGGCGGAGTACATTGACGAGGATGAGCTTCTGAATATGCCGAGTGTCATCGAAGACATGGCCAGGGGAATGCAGGTCTTACAACAAACAAAGCCTAGACAATTTCGATTGTTTTTGCTGTTGCTGCTCTTGCTCTTGTTGTTGTTGTTGTTGTAA 630 0.5381 MDDGNNPLPPPIQIPPATTPAPTSSSSSPSSAVRYRGTRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDAPLNFPDSVQSYPIPASLSPPDIRAAAAAAAQARLPRPPQNPLEGSSSGGGGNDNVIVEGSCSSLSTEEQGGMMVAEYIDEDELLNMPSVIEDMARGMQVLQQTKPRQFRLFLLLLLLLLLLLLL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03982 209 Pfam AP2 domain 39 82 IPR001471 GO:0003700|GO:0006355
Aip09g03982 209 MobiDBLite consensus disorder prediction 125 143 - -
Aip09g03982 209 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Aip09g03982 209 SMART rav1_2 34 96 IPR001471 GO:0003700|GO:0006355
Aip09g03982 209 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Aip09g03982 209 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Aip09g03982 209 MobiDBLite consensus disorder prediction 1 43 - -
Aip09g03982 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 26 185 - -
Aip09g03982 209 MobiDBLite consensus disorder prediction 19 35 - -
Aip09g03982 209 ProSiteProfiles AP2/ERF domain profile. 34 90 IPR001471 GO:0003700|GO:0006355
Aip09g03982 209 MobiDBLite consensus disorder prediction 111 143 - -
Aip09g03982 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03982 Aip-Chr9 146240855 146241651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03982 35 182 AP2-EREBP Transcription Factor Family AT5G52020 52.229 1.97e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip09g03982 AP2 5.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03982 - - ccaj:109807514 186.808