Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03981 ATGTTTCCCATCAATCATATTGTCAATAACCAGCTTCCGAGTAGCTCCTCGGAGAACACTGTCTTGTCATCGCCGTTGTCGGAGGGGGAGGTAGTGCTGGCGGCTAGCCACCCCAAGAAGAGAGCGGGGAGGAAAAAGTTCAGGGAGACGCGCCACCCTGTGTACCGCGGCGTGCGGCGGAGGAACTCCGGCAAGTGGGTTTGCGAGGTGAGGGAGCCAAACAAGAAGACGAGGATATGGCTCGGGACGTTCGCCACTGCGGAGATGGCAGCGCGTGCGCACGACGTGGCCGCTATCGCTCTCAGGGGGAGGTCTGCCTGCCTCAACTTCGCAGATTCGGCGTGGCGCCTTCCCATGCCGGAGACGACAGACGCAAGAGACATCCAGAAGGCTGCAGCGGAAGCTGCCGAGGCATTCCGCCCCGTGACGGAATTGGAGACTGGTGAAGTGAGGCGGGAGGGTGCTGTGGGGGTAAAGGCGGCGTCAGAGACGACCATGGTGGCGGAGGCGGCGGAAGAGCAAGAAGGAGAAGGGGTGCCGGAGATTTGGAGGACCATGGCGTTGATGTCTCCAACGCATTACAGTGGGAGTGAGTTTGGCGTTGATGACGTGGAATTTGATGATGCCGAAGTATCGTTGTGGAGTTATTCGATTTAA 657 0.5906 MFPINHIVNNQLPSSSSENTVLSSPLSEGEVVLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRSACLNFADSAWRLPMPETTDARDIQKAAAEAAEAFRPVTELETGEVRREGAVGVKAASETTMVAEAAEEQEGEGVPEIWRTMALMSPTHYSGSEFGVDDVEFDDAEVSLWSYSI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03981 218 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 18 218 - -
Aip09g03981 218 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Aip09g03981 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 218 IPR045277 GO:0003700
Aip09g03981 218 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Aip09g03981 218 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Aip09g03981 218 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Aip09g03981 218 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Aip09g03981 218 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Aip09g03981 218 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Aip09g03981 218 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03981 Aip-Chr9 146224928 146226027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03981 24 216 AP2-EREBP Transcription Factor Family AT4G25470 59.314 4.30e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip09g03981 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03981 - K09286 aprc:113872706 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03760 05 145671879 145673194 Aip09g03981 09 146224928 146226027 ECH
Aip09g03981 09 146224928 146226027 Aip09g03981 09 146224928 146226027 ECH
Aip05g03760 05 145671879 145673194 Aip09g03981 09 146224928 146226027 PCT