Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03980 ATGGATGTAGATGGGGGCAACAAGCGTGTCTTCCACCGTCTTGCTGGAGCCACGGCGGCCGACACCAGGCACCACCAAAAAAAAGTGTGCTACCATTGGCAAGCTGGAAACTGCAACAGACATCCCTGCCCCTTTCTCCACAGCGCCACCGTCTACGGTAGCACCATGTCTAGCAATAATAATAATAATGGCCGCCGGAGCCAAACTTTTATGAATGGCACTTCCACGTGGGGCCATGGCAGTGGTGGAGGTAATCATAGAGCAGTTAGGAAGGCTGATAAAGTTTGTAATTACTGGGTGCAGGGGAATTGTGGTTATGGTGAGAGGTGTAAGTTCATTCATTCTTGGAGTTGTGGGGATGGTTTCTCTTTGCTGACTCAGCTTGAAGGCCACACCAAGGTTGTGAGTGGAATAGCTCTGCCTTCTGGTTCCGATAAGCTTTATACTGCAAGTATTGATGAGACTCTCAGAGTTTGGGACTGCCAGTCTGGACAGTGTACTGCTGAGATCAATGTTGGTGGCGAAGTAGGGTGCATGATCAATGAAGGACCTTGGATTTTTGTTGGTATACCCAATTGTGTTAAGGCTTGGAACACTCAAACTTGTATGGAACTAAGTCTACAAGGCCCTGTTGGACAAGTATATGCTCTTGTTGTCAACAATGATATTCTCTTTGCTGGTACACAGGATGGGTCTATATTGGCATGGAAGTTTAACGTAGTGGTCAATGTCTTTGAGCCTGCTGCATCGCTTACAGGTCACTCTCGTGGTGTTGTTTCATTAGTAGTTGGACCCAATAGACTTTACTCTGCTTCAATGGACAATACTATAAGAGTGTGGAACCTTGAACATTTACAGTGTCTACAGATATTAACGGATCACACATCTATTGTGATGTCAGTTCTCTGCTGGGACCAGTTCCTTCTATCTTGTTCACTGGACAAAACAGTAAAGGTGTGGGTTACTACAGAAAGTGGAAAGTTAGAAGTAACATACACTCACAAAGAAGAACATGGTGTGGTTGCTCTTTGTGGGGTGCATGATTCACAAGGAAAGCCAATTTTGCTTTGCTCTTGCACTGATAATACCCTACGCCTTTATGAGTTACCTTCATTTCTAGATAGAGGAAAAATATTCACAAAACAAGAGATACGAACAATTAAGATGGGGCCTGGTGGCATATTTTTCACTGGTGATGGATCAGGTCAAGTGAGAGTATGGAATTGGATAATAGACCCAACCATTTCCATCCAATAA 1257 0.4439 MDVDGGNKRVFHRLAGATAADTRHHQKKVCYHWQAGNCNRHPCPFLHSATVYGSTMSSNNNNNGRRSQTFMNGTSTWGHGSGGGNHRAVRKADKVCNYWVQGNCGYGERCKFIHSWSCGDGFSLLTQLEGHTKVVSGIALPSGSDKLYTASIDETLRVWDCQSGQCTAEINVGGEVGCMINEGPWIFVGIPNCVKAWNTQTCMELSLQGPVGQVYALVVNNDILFAGTQDGSILAWKFNVVVNVFEPAASLTGHSRGVVSLVVGPNRLYSASMDNTIRVWNLEHLQCLQILTDHTSIVMSVLCWDQFLLSCSLDKTVKVWVTTESGKLEVTYTHKEEHGVVALCGVHDSQGKPILLCSCTDNTLRLYELPSFLDRGKIFTKQEIRTIKMGPGGIFFTGDGSGQVRVWNWIIDPTISIQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03980 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 290 IPR001680 GO:0005515
Aip09g03980 418 SUPERFAMILY WD40 repeat-like 109 408 IPR036322 GO:0005515
Aip09g03980 418 SMART WD40_4 244 281 IPR001680 GO:0005515
Aip09g03980 418 SMART WD40_4 121 160 IPR001680 GO:0005515
Aip09g03980 418 SMART WD40_4 200 237 IPR001680 GO:0005515
Aip09g03980 418 SMART WD40_4 374 408 IPR001680 GO:0005515
Aip09g03980 418 SMART WD40_4 325 368 IPR001680 GO:0005515
Aip09g03980 418 SMART WD40_4 284 321 IPR001680 GO:0005515
Aip09g03980 418 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 414 - -
Aip09g03980 418 Gene3D - 245 414 IPR015943 GO:0005515
Aip09g03980 418 Gene3D - 114 244 IPR015943 GO:0005515
Aip09g03980 418 Pfam WD domain, G-beta repeat 124 160 IPR001680 GO:0005515
Aip09g03980 418 Pfam WD domain, G-beta repeat 286 320 IPR001680 GO:0005515
Aip09g03980 418 Pfam WD domain, G-beta repeat 247 281 IPR001680 GO:0005515
Aip09g03980 418 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Aip09g03980 418 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Aip09g03980 418 PANTHER - 1 414 IPR044715 -
Aip09g03980 418 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Aip09g03980 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 115 IPR000571 GO:0046872
Aip09g03980 418 ProSiteProfiles Zinc finger C3H1-type profile. 29 50 IPR000571 GO:0046872
Aip09g03980 418 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Aip09g03980 418 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Aip09g03980 418 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Aip09g03980 418 Gene3D - 22 113 - -
Aip09g03980 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 128 160 - -
Aip09g03980 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 283 - -
Aip09g03980 418 SMART c3hfinal6 92 116 IPR000571 GO:0046872
Aip09g03980 418 SMART c3hfinal6 25 49 IPR000571 GO:0046872
Aip09g03980 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 169 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03980 Aip-Chr9 146221744 146223964 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip09g03980 WD40 0.023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03980 - - gmx:100792089 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03980 09 146221744 146223964 Aip09g03980 09 146221744 146223964 ECH