Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03973 ATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCACAAGTTGGTGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGAGTTTCCACACAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATTCTTGAACTGTCTAGAAGGAAGATGCTGGGACACTGCTTGAGTTCTTCTTCTTTTGATGAAATCCAACAAATGGAGGACAAGCTCCATACAAGTTTGCAATGCATCCGTGTGAGAAAGACTCAACTATTTAAGGAGCAAATCGAGCAACTACAGAGCAAGGAGAGAAACTTGCTCAAAGAAAATGCCCGATTAAGTGCAATGTGCATGGAAAAACCATCGAAGCACAGAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGAGGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTGTGCTGATCATAATCAAATATATACATAG 645 0.3969 MVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGEFPHNKLREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSSSFDEIQQMEDKLHTSLQCIRVRKTQLFKEQIEQLQSKERNLLKENARLSAMCMEKPSKHREEEATETTHHTLEVETDLFIGLPKQCADHNQIYT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03973 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Aip09g03973 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip09g03973 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Aip09g03973 214 PANTHER MADS BOX PROTEIN 1 205 - -
Aip09g03973 214 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip09g03973 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 Coils Coil 144 171 - -
Aip09g03973 214 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Aip09g03973 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip09g03973 214 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03973 Aip-Chr9 146166233 146171036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03973 1 203 MADS-box Gene Family AT4G22950 48.815 2.93e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip09g03973 K-box 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03973 - - adu:107467111 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03973 09 146166233 146171036 Aip09g03973 09 146166233 146171036 ECH