Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03957 ATGGGGACCCCCAACGGGGATGTGAGGAAGAAGAAGGAGGAGGAGGAGGAGGCGGCTAAGTTGATGGAACAGGAATACCAAGACAAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGATCTGAATGCAGTTTGGAGGTTTAGGATATCGGAGCCATTGAGGGAGAGGCTGAAGGGGAAGGGAATAGAGTCACTGTTTCCAATTCAGGCCATCACCTTTGATACCATTCTTGATGGCTCTGATTTGGTTGGCCGTGCTCGAACCGGTCAGGGAAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTGACAAACGGTATAGCCAAAGCTTCAAGAAAGACTGGTTATAGAAGGCCTCCAAGCGTTCTGGTTCTTTTACCAACAAGGGAATTGGCATCTCAGGTTCACTCTGACTTTGAACTTTATGGTGGCGCCGTCGGATTAACATCTTGCTGTTTATATGGTGGAGCTCCATACCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGGATTAAGGATCATATAGAGAGGGAAAATATTGACCTAAGCCAGCTTAGATTTCGCGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTTGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTTTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTTGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCGTGCACTACTTCTGCCAGGTCCCGCCTTATTCCGGACATCATTCGCTGTTATAGCAGCGGAGGACGGACGATTATATTTACTGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGAGACATACAGCAGGCGCAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCAAGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGACGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTATATCCAAAATCGAAAGAGAATCCGGTGTCAAATTTGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCTATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCGGCATTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTGCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGGCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACCGCCGAGGGAAGTGGCGTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGACAAGGCCTCAAGTGTGAGGTTAGAGGTGTTGACAGCGTTGCCACGTTTGCAAGAAAAAGACCAATCAAGAGGTGGAAGATTTGGTAGTGGTGGCCCTCGTCGTGGTGGTTTCGGAGATAGAAGTGTTGGGAGCAGGTTTTTGGGTGGAAGAGGTGGCAGTGGCAGGAATGTTAGATTTTCCAGTGACAGATTCTCTAATAATGGTGGCATTGGGAGAGGTCGTGGCATCAGGAGTGGAAAGAGATGGTGA 1908 0.4591 MGTPNGDVRKKKEEEEEAAKLMEQEYQDKKEEEEEEEEDLNAVWRFRISEPLRERLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGIAKASRKTGYRRPPSVLVLLPTRELASQVHSDFELYGGAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVELLAKALAKAVGYTEMKKRSLLTSMENHVTLLLEIGKPIFTATFAYGVLRRFLAEEKVEAVKGLTLTAEGSGVVFDVPAEDLDTYLAGKDKASSVRLEVLTALPRLQEKDQSRGGRFGSGGPRRGGFGDRSVGSRFLGGRGGSGRNVRFSSDRFSNNGGIGRGRGIRSGKRW 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03957 635 SMART ultradead3 60 272 IPR014001 -
Aip09g03957 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 398 IPR027417 -
Aip09g03957 635 CDD SF2_C_DEAD 269 395 - -
Aip09g03957 635 MobiDBLite consensus disorder prediction 1 37 - -
Aip09g03957 635 Coils Coil 5 43 - -
Aip09g03957 635 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 607 - -
Aip09g03957 635 Pfam GUCT (NUC152) domain 475 570 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aip09g03957 635 Pfam DEAD/DEAH box helicase 65 242 IPR011545 GO:0003676|GO:0005524
Aip09g03957 635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 254 IPR014001 -
Aip09g03957 635 SUPERFAMILY RNA-binding domain, RBD 479 562 IPR035979 GO:0003676
Aip09g03957 635 CDD DEADc 52 249 - -
Aip09g03957 635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 425 IPR001650 -
Aip09g03957 635 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 6 607 - -
Aip09g03957 635 SMART helicmild6 309 386 IPR001650 -
Aip09g03957 635 MobiDBLite consensus disorder prediction 1 27 - -
Aip09g03957 635 Gene3D - 494 565 - -
Aip09g03957 635 Gene3D - 268 493 IPR027417 -
Aip09g03957 635 MobiDBLite consensus disorder prediction 573 635 - -
Aip09g03957 635 Pfam Helicase conserved C-terminal domain 289 386 IPR001650 -
Aip09g03957 635 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Aip09g03957 635 Gene3D - 5 255 IPR027417 -
Aip09g03957 635 CDD GUCT_RH7_like 482 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03957 Aip-Chr9 146003920 146006788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03957 78 428 Eukaryotic Initiation Factors Gene Family AT1G72730 30.056 6.77e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03957 K16911 - gmx:100820207 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03957 09 146003920 146006788 Aip09g03957 09 146003920 146006788 ECH