Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03949 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACATTGTGATTAAACCCCATTCTCAGAACCACATGAATAAGGCACCAAAAGCTGCACAAAATGGAAAAGGACCACCACCACCACCACCACAAGAGAACCACCAGCAGCACAACAACAACCACCACCACCACAACCACCAGTCATCACCTCAACCAAGAAACAAAGGGAGAAGAAGGGGCAGAGGTGGGAGAAAATCTGATCAAGGAGAGATTTTGATGAGACCAAGTTGCAGGCCCTGCACTGCTGGTGCTGCTCCTCCTCCTGTGACAGCAAATGGGATTAATAGTAATAATGTTGAGAATGGCTGCAAGATCAGTGGTGGTGATGGTGGTAACATAACAGACATGGGTTTTCCCACTTCAAGCAAATCCTTGAGCTTTGCTCGCAGGCCTGGCTATGGACAAGTTGGGACAAAATGCATTGTCAAGGCTAATCACTTCTTTGCTGAGCTACCGGACAAGGACTTGAACCAATATGATGTAACAATTAGCCCAGAAGTGAGTTCAAGAGCAGTAAATCGGTCCATAATAGCAGAACTTGTGAGGCTTTACAAAGAGTCTGATTTGGGGATGAGGCTTCCTGCTTATGATGGCAGGAAAAGTCTGTACACTGCTGGCCAGCTTCCCTTTGCCTGGAGAGAATTTAAGATAAAGCTTCTTGATGATAATGATGATGGAGTTAATGGCCCCAAAAGGGAAAGGGAATATAGGGTGGTGATCAAGTTTGTTGCTCGTGCAAACTTGCATCACTTGGGCCAGTTTCTAGCCGGCAAGCGAGCTGATGCACCACAGGAGGCACTTCAGATTCTTGATATTGTACTGAGAGAGCTATCAACTAAGAGGTACTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCTCAACGGCTTGGAGAGGGGTTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGACATGGCTTCTGCTGCATTCATTGAGCCTCTTCCAGTAGTAGAATTTATTAAGAAAGCCCTTAGAGGAGTTAAGGTTGAAGTAACACACAGAGGAAGTGTAAGAAGGAAATATCGCGTTTCAGGATTGACTTCTCAACCAACAAGAGAACTTGTGTTCCCTGTTGATGAGAACTCAACTATGAAGTCAGTGGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCAAACTACTTACCCATGGAGGCCTGTAAAATTGTGGAGGGGCAAAGGTATACAAAAAGATTGAATGAGAAGCAAATTACTGCACTGCTCAAAGTTACTTGCCAGAGACCACGCGATCGCGAAAATGACATCTTACGGACGGTGCAACATAATTCTTATAATGAAGATCCTTATGCAAAGGAATTTGGTCTTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATACCATGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAACATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCGTGCATTAACTTTTCGCGGAGTGTGCAAGATAGTGTTGCTCGCACATTTTGTCATGAGCTTGCTCAAATGTGTCAAGTGTCTGGCATGGAATTCAATCCAGAGCCTGTCATTCCCATCTACAATGCCAAGCCAGAGCAGATCACCAAACAGTACTTGGCAAATGTATCTCTAAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACCATAATATTCGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACTCTAGCCCTTCAATAGCTGCTGTAGTAGCATCCCAGGACTGGCCTGAAGTGACAAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAGCTTATACAAGATTTGTACAAAACTTGGCACGATCCTGTTCGTGGCACAGTCAGCGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAAGGCGACAGGGCAAAAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTCTCCTTTATGAATTAGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAACGACATCATACACGGTTATTCGCTAACAACCACCGGGACAGGAGCAGTACAGATAAGAGTGGGAATATAATGCCTGGAACTGTTGTTGATTCTAAAATATGCCATCCAACAGAATTTGATTTCTATCTATGCAGTCATGCTGGCATTCAGGGTACAAGTAGGCCTGCCCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTGTGTTACACATATGCTAGATGTACTCGATCTGTATCAGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCATTTAGAGCACGTTTCTATATGGAGCCAGATATGCAAGAGAATGACTCTACAGGTGGTGGTAACAGTGGCGGTCGTGGAGGGTCGAAGGGAACTCGAGCAACCGGAGAGTGTGGTGTGAAGCCACTGCCAGCCTTGAAAGAGAATGTGAAGAGAGTAATGTTTTACTGTTGA 2772 0.4401 MPVRQMKESSEQHIVIKPHSQNHMNKAPKAAQNGKGPPPPPPQENHQQHNNNHHHHNHQSSPQPRNKGRRRGRGGRKSDQGEILMRPSCRPCTAGAAPPPVTANGINSNNVENGCKISGGDGGNITDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVSSRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLLDDNDDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNSYNEDPYAKEFGLKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCHELAQMCQVSGMEFNPEPVIPIYNAKPEQITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENDSTGGGNSGGRGGSKGTRATGECGVKPLPALKENVKRVMFYC 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03949 923 SUPERFAMILY PAZ domain 153 482 IPR036085 GO:0005515
Aip09g03949 923 MobiDBLite consensus disorder prediction 51 74 - -
Aip09g03949 923 MobiDBLite consensus disorder prediction 881 895 - -
Aip09g03949 923 SMART PAZ_2_a_3 338 463 IPR003100 GO:0005515
Aip09g03949 923 Gene3D - 505 593 - -
Aip09g03949 923 Pfam Argonaute linker 1 domain 296 345 IPR014811 -
Aip09g03949 923 ProSiteProfiles PAZ domain profile. 353 441 IPR003100 GO:0005515
Aip09g03949 923 Gene3D - 623 923 IPR036397 GO:0003676
Aip09g03949 923 ProSiteProfiles Piwi domain profile. 579 875 IPR003165 GO:0003676
Aip09g03949 923 SMART DUF1785_2 295 347 IPR014811 -
Aip09g03949 923 CDD PAZ_argonaute_like 354 440 - -
Aip09g03949 923 Pfam N-terminal domain of argonaute 151 286 IPR032474 -
Aip09g03949 923 MobiDBLite consensus disorder prediction 1 96 - -
Aip09g03949 923 MobiDBLite consensus disorder prediction 879 901 - -
Aip09g03949 923 Pfam Mid domain of argonaute 524 594 IPR032473 -
Aip09g03949 923 PANTHER PROTEIN ARGONAUTE 10 66 595 - -
Aip09g03949 923 PANTHER PROTEIN ARGONAUTE 10 592 922 - -
Aip09g03949 923 SMART Piwi_a_2 546 875 IPR003165 GO:0003676
Aip09g03949 923 Gene3D - 594 620 - -
Aip09g03949 923 SUPERFAMILY Ribonuclease H-like 594 876 IPR012337 -
Aip09g03949 923 Pfam Argonaute linker 2 domain 467 513 IPR032472 -
Aip09g03949 923 Pfam PAZ domain 354 457 IPR003100 GO:0005515
Aip09g03949 923 Gene3D paz domain 349 444 - -
Aip09g03949 923 Pfam Piwi domain 584 874 IPR003165 GO:0003676
Aip09g03949 923 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 66 595 - -
Aip09g03949 923 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 592 922 - -
Aip09g03949 923 CDD Piwi_ago-like 485 874 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03949 Aip-Chr9 145937173 145943520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03949 592 923 Eukaryotic Initiation Factors Gene Family AT5G43810 89.489 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03949 K11593 - gmx:100816999 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03949 09 145937173 145943520 Aip09g03949 09 145937173 145943520 ECH