Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03940 ATGAATAATCCTGATGATCATGGTGTTGGTAGAGTAATGAAGGAGGAGTATCTAGGAGAAGGGTCTTGTTCCTTTTCATATCCAATGGTGGTGGATGTTCCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCATCCAATGGAGGGGCTTAATGAGAGTGGTCCTCCGCCGTTCCTGACAAAGACATATGACATCGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGAGCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCCATTACCCTTCTCCCAAGATTCTTCAAGCACAACAATTTCTCCAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGAGTACTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCATCATCATCATCAGCAAGGTTTAGACCCTTGTGTTGAAGTTGGAAGGTTTGGTGGATTAGATGGAGAACTCAACCGGTTGCGGCGTGACCGGCAGGTACTAATGGCGGAGCTGGTGAAGCTCAGACAACAGCAGCAGGCTACAAAGTCTCAAATTCAAGCCATGGAAGTTAAGCTTCGAAAGACGGAGCAGAAACAGCAGCAGATGATGACCTTCATGGCAAGGGCAATGCAGAATCCAAACTTTGTGCAGCAATTGGTTCAACAAAAGGATTGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGACCTATTCATCAAGGACCTAGTAACAATCATGATGGATTATTAGGTTATGTTGATGAAGATTGCTCAACTTTTATTAAACTAGAATCACACATTGATGATGATGATGATGATGATAATGATGACAAGTTTGATTTTGAGGTATCAGAGATGGACCTTCTTGGTTTTGAAGATGAAGATGTTCTTGCAGCTGCTGAAGATGTAGATGTCTTGGCTGAACAACTTGGTTATTTAGCTTCTAGTCCTCATAAATAA 1026 0.4279 MNNPDDHGVGRVMKEEYLGEGSCSFSYPMVVDVPPPPPPPPPPPHPMEGLNESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTHHHHQQGLDPCVEVGRFGGLDGELNRLRRDRQVLMAELVKLRQQQQATKSQIQAMEVKLRKTEQKQQQMMTFMARAMQNPNFVQQLVQQKDWRKELEEAFSNKRMRPIHQGPSNNHDGLLGYVDEDCSTFIKLESHIDDDDDDDNDDKFDFEVSEMDLLGFEDEDVLAAAEDVDVLAEQLGYLASSPHK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03940 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 43 317 IPR027725 -
Aip09g03940 341 MobiDBLite consensus disorder prediction 29 53 - -
Aip09g03940 341 SMART hsfneu3 54 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip09g03940 341 MobiDBLite consensus disorder prediction 30 51 - -
Aip09g03940 341 SUPERFAMILY "Winged helix" DNA-binding domain 53 147 IPR036390 -
Aip09g03940 341 Coils Coil 176 217 - -
Aip09g03940 341 Pfam HSF-type DNA-binding 58 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip09g03940 341 Gene3D - 50 149 IPR036388 -
Aip09g03940 341 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 43 317 - -
Aip09g03940 341 ProSitePatterns HSF-type DNA-binding domain signature. 97 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip09g03940 341 PRINTS Heat shock factor (HSF) domain signature 58 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip09g03940 341 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip09g03940 341 PRINTS Heat shock factor (HSF) domain signature 109 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03940 Aip-Chr9 145851524 145853917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03940 38 340 HSF AT3G22830 53.297 6.73e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip09g03940 HSF_DNA-bind 4.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03940 K09419 - gmx:100809515 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03940 09 145851524 145853917 Aip09g03940 09 145851524 145853917 ECH