Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03927 ATGGCCTCTCATTGTCCGAAAAGAGAATTAGGCCCTTTCCTGAGTCATCTCATTCTGATTCTGATATCCATCAACCCTTCACACCAATTTGAATACAAGGAAGAGCACAGCTCTTATCGGTTCCTCCCTCAACTAAATCCGAGGCTCTCAAAAGCCTACATAGCACTCCAAGCATGGAAGCATTCAATAGTGTCAGACCCAAAGAACATGACCCTCAACTGGTGTGGACCCCACGTGTGCAACTACACCGGAGTCTACTGTGCACCAGCACCAGATAACCCCCACATATACACCGTTGCAGGAATTGACCTAAACCATGGCAACATAGCTGGTTCGTTACCACAACAACTTGGCCTCTTAACTGACCTGGCACTCTTCCACATCAACTCTAACCGCTTCTGTGGCTCCGTCCCAACAACCTTCAACGGCCTCAAACTCCTCTTCGAGCTTGACGTCAGCAACAACGATCTCTCTGGCCCCTTTCCAGAAGTTGTTCTATGCCTCCCTTCGCTCAAATACTTAGACATAAGGTTCAACAACTTCCACGGCGCTATTCCCACGCGCCTCTTCGACCTCAAACTCGACGCGCTCTTCATCAACAACAACAACTTCCAGTTCTCCTTGCCGGAGAATTTCGGAAACTCAACGGCCTCGGTTATTGTGTTCGCCAACAACAATCTGAGGGGATGTTTCCCGTCGAGTGTGGCGAAGATGAAGGACACGCTGAACGAGATCATAATTACGAATAGCGGGATAACGGGTTGTTTACCGCGTGAGATAGGGTTGTTGGAGAGAGTAACGGTTTTCGATGTGAGCTTCAACAAGATCGTTGGGGAATTACCAGAATCAATTGAAGGGATGAAGAAGTTGGAACAGTTGAACGTGGCGCATAACATGCTGTCTGGCATCATTCCCGAGAGTGTGTGCAACTTGCCGAGGCTGCAGAACTTTACGTACTCCTATAACTACTTCTGCGATGAATCTCCGCTGTGTTTGAAGCTTCCGGATAGTGATGATCGCAAGAACTGTATTCCTTATAGGCCGCTGCAACGGTCCCTTCAGGAATGTGCCGCTTTTTATAAACATCCGGTTCAATGTGCTGCCTTTGGTTGCTCAACAACTGCACCGCCGCCGCCAGCACCACCTCCACCTCCACCTCCACCTCCACCACCGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAGTTTTAAAAATAAAAAATAA 1293 0.4524 MASHCPKRELGPFLSHLILILISINPSHQFEYKEEHSSYRFLPQLNPRLSKAYIALQAWKHSIVSDPKNMTLNWCGPHVCNYTGVYCAPAPDNPHIYTVAGIDLNHGNIAGSLPQQLGLLTDLALFHINSNRFCGSVPTTFNGLKLLFELDVSNNDLSGPFPEVVLCLPSLKYLDIRFNNFHGAIPTRLFDLKLDALFINNNNFQFSLPENFGNSTASVIVFANNNLRGCFPSSVAKMKDTLNEIIITNSGITGCLPREIGLLERVTVFDVSFNKIVGELPESIEGMKKLEQLNVAHNMLSGIIPESVCNLPRLQNFTYSYNYFCDESPLCLKLPDSDDRKNCIPYRPLQRSLQECAAFYKHPVQCAAFGCSTTAPPPPAPPPPPPPPPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSFKNKK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03927 430 Pfam Leucine rich repeat 124 181 IPR001611 GO:0005515
Aip09g03927 430 Pfam Leucine rich repeat 265 322 IPR001611 GO:0005515
Aip09g03927 430 Gene3D Ribonuclease Inhibitor 51 342 IPR032675 -
Aip09g03927 430 MobiDBLite consensus disorder prediction 375 395 - -
Aip09g03927 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 19 383 - -
Aip09g03927 430 SUPERFAMILY L domain-like 54 333 - -
Aip09g03927 430 MobiDBLite consensus disorder prediction 375 396 - -
Aip09g03927 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03927 Aip-Chr9 145764099 145765391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03927 41 371 Leucine-rich Repeat extension Gene Families AT3G22800 67.568 2.21e-160 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03927 - - adu:107467112 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03927 09 145764099 145765391 Aip09g03927 09 145764099 145765391 ECH