Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03901 ATGGAACCGGGCATGAGATCCGATGGCCCTTCTGGGGCTTTGGTGAAGAACAAGAGATCTTCAGGGTGTTTGGTTGTTAGGAAGAAAGGTGATGGATTGAGTGGTGGGGTTGGTAGTTCTTTCAGCTCCAGGAAGTTGAATGCATCAAAGAAAGGGAAGAAGAGGCCCAAGGTTGAGTTAAGTAGTAGCGATTCGGAATCGAGTCAGGAGCTATTGATGCCACCTTCTAGAGGGCTTGGTCCTGAGACCATTCGAGTATGCAATGGTTTGACAGCTGTTAAGCGGGACGAGGCTGGTGATGGTGGAACTGGAAGGAAGCGGGAGAGGTTTGAGGACGTTAGTCATAACGGTGATGAGATGGGGGAGGGAAATGGTTCAGAGAGGAGGGAAAAGAAACTTAGTAAGATTGATGTGTTTGATTTCGATGAATACGATGCTATGGATGCAGACATGATGAGAAGGAGCCATGTAGATAGCAATGGGGGCGGCTTTGGAGGGGAAAGGCTTGGGGGAGCAATGCATGCTGCCAGAGGTGGCACTGATAGGGAATTCAAAACTGGTTCAAGCAGACACACCCTTAATAAGAGAAAGAACTCCCATTGTGATAAGGCAAGTCACTTGCACCCAAGAGATAGTAAATTAAAGAAGTGGGATGCAGCTCAGCATCCTCAGCCCATGCCGAAGGAGAAGTTTAAGTCTGATGAATCCATTAGGGTTCAAGGGAAAAATGGTGTTTTAAAGGTGATGGTTAATAAGAAGATGTGTAAGCCATCAAAGCACGTTGATAATCGCAAACATGTAGAAGGGCAACGAAGTTTGAGGGCTGAGGGCATTGCCAAGAAGAATGTTCTGATCCATCCTTCATCTTGCTTGGAAAAAAGCCCTGTTAAGAAACAAGGTTTACATGCTAGGACAGAGAAGAAATTGGCAGCAAGAAGAAAATCTTTGTCAAGTAACGACAGTAAGGGTGATGACCAGGATTCAGATAACAGTGGCACATCATTGAATGTGGGAGTGAAGTGCATTAAAGCTTTCAAGTCTTTAAAGAGGGGGACCTCGGACGATGAACAGACTCCTAAGCATGAAAAGACCCCAACCACAGCAGGAACTAAAAAGGAGAAAATAAAGCATGAAAAGACCCCAACTACAGCAGGAACTAAAAAGGAGAAAATAAGGCGTGGTAGTGGCACAGAAAAGCAGAAGCTACGAGAACAGATACGGGAGATGCTTCTTAATGCAGGTTGGACCATAGACTATCGTCCTCGGAGGAAGAGAGACTATCTTGATGCAGTTTACATTAATCCTGGGGGTACAGCCTATTGGTCCATCATCAAGGCCTATGAGGCGCTTCAGAAGCAATTGAGTGCTGACGACCCTGGGGCCAAGCCCAAAGGGGAGTGCTCTTCTTTTGCTCGTATCAGAGATGATGTGCTTAGTCAGTTAACAAGGAATACTCAGAAGAAGATGGAGAGAGAACTAAAGAAGAAGAAGAAGAAACAGAAGAAGGAAAGAGATGATAGTGAGAGTGATAGTGGAAAAGAACCTCGCATTAGGAGATCTTTAAGCAACAAGCGTGATATGAATGGCATGGAAAGTGATAGTGATGAAGAGAAATTAAGCTCCTTTTTAAAGCGGGGGTGTAAGTCGATGAAAAATAAAATGATTGAAAATACTGTTAACAGTTGTAGATCTACAAGCAAGAAAGTTGACCTTCACACAAATGAAGGAACTGAAAAATCACTTTTAGGAAATGATCCTCATCAACTACATGGGAGGAAAAGTAAGAAACATGGAAGGTGCACTTTATTGGTTCGTAATTCCAACATAGGGTCAAATTCAGATTCTGATGACTATGTTCCATATATGGGCAAACGAACGGTGCTTTCCTGGTTGATTGACTCTGGAGCTGTACAGTTAAGCCAAAAGGTTCAGTATCGTAGAAGGAAACGTGTAATGCAGGAGGGATGGGTCACCAGGGATGGGATTCACTGTAGTTGCTGTAGTAAAATACTCACTGTTTCCAAGTTTGGGCTTCATGCAGGAAGTAAATTGCGCCAGCCATATCAAAACATATATTTGGATTCTGGAGATTCTCTTCTACAGTGCCAGATAGATGCATGGAATAAACAAGAGAATTCTGAGAAAATTGCTTTCCATGCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGTTGTCCATCAACGTTTCATCTGAGTTGCTTGAATATACAGATGCTCCCCCCCGGTGAATGGCATTGTCCGAATTGCACATGCAAATTTTGTGGAGTAGTCCGTGGTCCTGTAAACAAAGAAGATGAATCAACTTTAAATGCCCTACATAGATGCAACTTATGCGATAAAAAATTTCATGAATGTTGTGCTAAGGAGATGAAAACCCTTCCTACTAACTCCGATATGTCAAGCCCTTCCTTTTGCGGAAGGGACTGCAAAGAGCTTTCTGAGCACTTGAAGAAATACCTTGGTACCAGGCATGAAATAGATGGAGGCTTCACATGGTCTCTCATTCATAGAACAGAAGATGACTCGGAGGCATCTAGTAGGGGAATTATGCAGAGGGTTGAATGGAACTCCAAGCTAGCAGTTGCACTGACTGTGATGGATGAATGCTTTTTGCCAGTTATTGATAGGAGAAGTGGGGTCAATTTAATACATAATGTTTTATATAATAGTGGGTCAAACTTCAGCCGGTTGAATTACACTGGCTTTTATACTGCGATTTTGGAGCAAGGCGATGAAATAATTTCTGCAGCTTCTATCAGGTTCCATGGGACCAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATGTATAGGCATCAGGGGATGTTGCGCAGGCTTTTTTCTGCCATTGAATTGGCCCTTTGCTCTCTGAAGGTTGAGAAATTGGTTATTCCAGCAATCTCTGAACTGATTCATACATGGACAACAGTTTTTGGCTTCATGCATCTTGAGGAATCACTCAGACAGGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATAGATATGTTGGAGAAAGTGCTAGCCAAACAAGGAAAACTTGATGGTGTTGAGAAAATGGAAACTAGAGATGAATTTGTTACTAAGCCTAATATGGCTGGTAAGTTGGATATGAATTCCTCAGCTCTGGAAGATCCTGAACGAAGTGATCATGCTAATTCAAATCCTGACAATGAGATAAACGACGACTCTAGTGATGCTTCTCAAGAACAGGATAATCACATTTTGGTTGACAGCACCAAATCTCATTCTGCAGATAGATCATCTGATTTTGTTTCAAATAAATGTGTTTCTCCTTCTAGTACCAGGGATGATGTGCTAGAAACAAACAATAAAACAGTGACAGCTTTTCCTGGTAATAATAAATTGCATCCCTCTGTGAAATGTCAAAATCACACTTCTTTGAGCAGTCCTCCATTAGTTTCTCCATCTCCAGATTGCCATGAACTTGCTGCTTTGTATTCGGTGAATGTATGTTCGGACCCTGATTCTGCGAAAAATCTGGCACAACCTGTTTCTGATGGACAATGTCACACGCACACTGATGACGTTAATCCAGGGTTGGATTCTCAAGTGGGAGATAATGCTTTGTCTTCTAAAGAGGTTGATATGAATGATGCCCGTGATGAGGTTCTTGAAGGTGATCAATCAGTGAATTTATCTCAGGGTAAAATTACGAAGGAGAAAAATGAAGTCGTGGATGTGTCTGGTTTTGTTCCCAATCATGCTGATGAGAGTTCTTTGCAAGTGAAATCTGATTTGAAGGATGAAATTGTATTAGAGGGAGAAAAGAATTTGGACAAAGAGGTTGCATCACGTGAAATGTGTGTGGATGAAACTAGCCCAAGGGCATCTGGTGCTAGTTCTGAAACTGATCCAGCTTAA 3960 0.4237 MEPGMRSDGPSGALVKNKRSSGCLVVRKKGDGLSGGVGSSFSSRKLNASKKGKKRPKVELSSSDSESSQELLMPPSRGLGPETIRVCNGLTAVKRDEAGDGGTGRKRERFEDVSHNGDEMGEGNGSERREKKLSKIDVFDFDEYDAMDADMMRRSHVDSNGGGFGGERLGGAMHAARGGTDREFKTGSSRHTLNKRKNSHCDKASHLHPRDSKLKKWDAAQHPQPMPKEKFKSDESIRVQGKNGVLKVMVNKKMCKPSKHVDNRKHVEGQRSLRAEGIAKKNVLIHPSSCLEKSPVKKQGLHARTEKKLAARRKSLSSNDSKGDDQDSDNSGTSLNVGVKCIKAFKSLKRGTSDDEQTPKHEKTPTTAGTKKEKIKHEKTPTTAGTKKEKIRRGSGTEKQKLREQIREMLLNAGWTIDYRPRRKRDYLDAVYINPGGTAYWSIIKAYEALQKQLSADDPGAKPKGECSSFARIRDDVLSQLTRNTQKKMERELKKKKKKQKKERDDSESDSGKEPRIRRSLSNKRDMNGMESDSDEEKLSSFLKRGCKSMKNKMIENTVNSCRSTSKKVDLHTNEGTEKSLLGNDPHQLHGRKSKKHGRCTLLVRNSNIGSNSDSDDYVPYMGKRTVLSWLIDSGAVQLSQKVQYRRRKRVMQEGWVTRDGIHCSCCSKILTVSKFGLHAGSKLRQPYQNIYLDSGDSLLQCQIDAWNKQENSEKIAFHAVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHLSCLNIQMLPPGEWHCPNCTCKFCGVVRGPVNKEDESTLNALHRCNLCDKKFHECCAKEMKTLPTNSDMSSPSFCGRDCKELSEHLKKYLGTRHEIDGGFTWSLIHRTEDDSEASSRGIMQRVEWNSKLAVALTVMDECFLPVIDRRSGVNLIHNVLYNSGSNFSRLNYTGFYTAILEQGDEIISAASIRFHGTKLAEMPFIGTRHMYRHQGMLRRLFSAIELALCSLKVEKLVIPAISELIHTWTTVFGFMHLEESLRQEMRSLNMLVFPGIDMLEKVLAKQGKLDGVEKMETRDEFVTKPNMAGKLDMNSSALEDPERSDHANSNPDNEINDDSSDASQEQDNHILVDSTKSHSADRSSDFVSNKCVSPSSTRDDVLETNNKTVTAFPGNNKLHPSVKCQNHTSLSSPPLVSPSPDCHELAALYSVNVCSDPDSAKNLAQPVSDGQCHTHTDDVNPGLDSQVGDNALSSKEVDMNDARDEVLEGDQSVNLSQGKITKEKNEVVDVSGFVPNHADESSLQVKSDLKDEIVLEGEKNLDKEVASREMCVDETSPRASGASSETDPA 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03901 1319 Coils Coil 483 510 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 297 327 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 1066 1082 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 478 539 - -
Aip09g03901 1319 PANTHER PHD FINGER FAMILY PROTEIN 1 1263 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 1111 1129 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 349 398 - -
Aip09g03901 1319 ProSitePatterns Zinc finger PHD-type signature. 733 772 IPR019786 -
Aip09g03901 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 849 IPR013083 -
Aip09g03901 1319 SUPERFAMILY FYVE/PHD zinc finger 722 781 IPR011011 -
Aip09g03901 1319 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1263 - -
Aip09g03901 1319 ProSiteProfiles Zinc finger PHD-type profile. 730 775 IPR019787 -
Aip09g03901 1319 SMART PHD_3 774 833 IPR001965 -
Aip09g03901 1319 SMART PHD_3 732 773 IPR001965 -
Aip09g03901 1319 Pfam Tify domain binding domain 655 705 IPR032308 -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 1288 1319 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 1 134 - -
Aip09g03901 1319 Pfam PHD-finger 733 775 IPR019787 -
Aip09g03901 1319 CDD PHD2_CHD_II 733 772 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 198 236 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 258 333 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 499 539 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 158 236 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 98 134 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 1050 1129 - -
Aip09g03901 1319 MobiDBLite consensus disorder prediction 258 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03901 Aip-Chr9 145550356 145556669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03901 1 1033 PHD Transcription Factor Family AT4G14920 46.774 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip09g03901 TDBD 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03901 - - adu:107466994 1827.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03901 09 145550356 145556669 Aip09g03901 09 145550356 145556669 ECH