Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03879 ATGTTCAGCCGCGTGAGGAGCGATGGAGTTCCTTCCCGCAAGGGCGTAGGCGCGACGAAGCTGGGCGCTACAGCTCCGGTCGGAGGAATCGGAGGCTCCACGTCGCACAGGAGCGGATCGGTTGGCTACAGGTTGCTTCGTGGACAGCTGGGCGGTGGCTGGGGTGGGTGGGGTCTTGCCANNNNNNNNNNNNNNNACGACGGGGATAGAAGGGTTAAAGGGAAAAATTTTGAATTAGAGCTCACACATACAAGGACGCACACAAGAGCCTTCTTCTTCGTCTTCATGGAGCTTCACAAGCGCCACGTCCACAGCCTCTCCGAGAGGAAGGGCCAGAAGCGCAAGCTCGATGACCAGCTCCATGCCAACCGCCAGATCTCGCCGCCACCGCCAACGGCCGACGAGCGCGCCGCCATCCTCTGCCAAGCCTCTGACCAGGTCCGCGTCCTTGACTCCACCTTCACGTGGAACGAAGCCGATCGAGCTGCCGCTAAGCGCGCCACTCACACGCTCGCCGATCTCGCCAAGAACGAGGAAGTTGCTAACGTGATTGTCGAAGGAGGCGCTATTCGAGCTCTGGTTAGGCACCTTCAGGCGCCACCTATCGGCGACGACGACCGTGTGCAGAAGCCGTTGCCGTTTGAGCATGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTACTTGCCGTCAAGCCAGAACATCAACAGCTCATTGTTGACAGTGGTGCCTTGATTCATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGTTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCACGAGAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTAGTGCACTGCGAACCCTGGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAAATCTAATTCTAATGCTTCGCTCTGAAGATGCAGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTTCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCGGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTACAGAGAGGTGCTGTCCAGCCATTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTTGCGTTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCCTTGCACATAATGGTGGCTTGGTGCCATTGCTGAATCTTCTTGATTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATCGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCGTGGCCGTGTGCTGAAGCATTTACTAGGGATTTTTATCGAACACCATGGTCTCGAGTTGCTTATTGGGCTTCTTGGCTCATCTGGCTCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCTCAACTTTGTCTCCCGTGGATGCTGCCCCCCTTTCTCCAACACCACAGGTATATTTAGGGGAGAAGTTTGTAAACAATGCCACGTTGTCAGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTAGCGTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAACTGAAATCACTCTGGATATAGCTCAAGACCTTCTCCGAGCAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTCTGTGAATACACAATTGCAAAGGATATATCACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCATTTAGTGCAATATCATTGAGGCACTCGTGCATCCTTTTTATATTGGAGCAATTTGATAAATTGAGTGCAAGGCCTGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATTCGTAATTACTTCATTAAAGTTCTTATGAAGACCAACTCCCGTAACATTCGACTCTGGGAAGGGGGGCCTCCCATCTGGTATAGTCGTATAGTGGTATACACAGCTTGGGTAGATGAGATAATCCCATTCCTGAGCTCTTCATTTTTTCTTCAGTTGTCATGCAGACAAAGACACAGTCCAACAGCGAATGTGTCTTTGAATTATTCCTTTATAAGTGACACAAATTTATAG 2502 0.464 MFSRVRSDGVPSRKGVGATKLGATAPVGGIGGSTSHRSGSVGYRLLRGQLGGGWGGWGLAXXXXXXDGDRRVKGKNFELELTHTRTHTRAFFFVFMELHKRHVHSLSERKGQKRKLDDQLHANRQISPPPPTADERAAILCQASDQVRVLDSTFTWNEADRAAAKRATHTLADLAKNEEVANVIVEGGAIRALVRHLQAPPIGDDDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALIHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADPKVQRAAASALRTLAFKNDENKNQIVECNALPNLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGLAHNGGLVPLLNLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIRGRVLKHLLGIFIEHHGLELLIGLLGSSGSKQQLDGAVALCKLANKASTLSPVDAAPLSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSTEITLDIAQDLLRAADQYLLEGLKRLCEYTIAKDISLENVSSMYELSEAFSAISLRHSCILFILEQFDKLSARPGHSLLIQRIIPEIRNYFIKVLMKTNSRNIRLWEGGPPIWYSRIVVYTAWVDEIIPFLSSSFFLQLSCRQRHSPTANVSLNYSFISDTNL 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03879 833 SUPERFAMILY POZ domain 600 703 IPR011333 -
Aip09g03879 833 SMART arm_5 232 280 IPR000225 GO:0005515
Aip09g03879 833 SMART arm_5 282 322 IPR000225 GO:0005515
Aip09g03879 833 SMART arm_5 324 364 IPR000225 GO:0005515
Aip09g03879 833 SMART arm_5 449 489 IPR000225 GO:0005515
Aip09g03879 833 SMART arm_5 408 448 IPR000225 GO:0005515
Aip09g03879 833 SMART arm_5 177 231 IPR000225 GO:0005515
Aip09g03879 833 SMART arm_5 366 406 IPR000225 GO:0005515
Aip09g03879 833 Gene3D Potassium Channel Kv1.1; Chain A 597 734 IPR011333 -
Aip09g03879 833 Gene3D - 390 584 IPR011989 -
Aip09g03879 833 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 96 769 - -
Aip09g03879 833 Pfam Armadillo/beta-catenin-like repeat 408 447 IPR000225 GO:0005515
Aip09g03879 833 Pfam Armadillo/beta-catenin-like repeat 324 363 IPR000225 GO:0005515
Aip09g03879 833 Pfam Armadillo/beta-catenin-like repeat 289 321 IPR000225 GO:0005515
Aip09g03879 833 SMART BTB_4 608 705 IPR000210 GO:0005515
Aip09g03879 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Aip09g03879 833 Gene3D - 132 263 IPR011989 -
Aip09g03879 833 ProSiteProfiles BTB domain profile. 608 675 IPR000210 GO:0005515
Aip09g03879 833 CDD BTB_POZ_ARIA_plant 595 710 - -
Aip09g03879 833 Gene3D - 264 389 IPR011989 -
Aip09g03879 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 328 IPR000225 GO:0005515
Aip09g03879 833 Pfam BTB/POZ domain 602 702 IPR000210 GO:0005515
Aip09g03879 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Aip09g03879 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 293 IPR000225 GO:0005515
Aip09g03879 833 SUPERFAMILY ARM repeat 158 508 IPR016024 -
Aip09g03879 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 502 IPR000225 GO:0005515
Aip09g03879 833 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 96 769 IPR044282 -
Aip09g03879 833 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03879 Aip-Chr9 145302379 145310671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03879 392 506 U-box Gene Family AT3G46510 29.915 4.46e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aip09g03879 BTB 6.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03879 - - aip:107616115 1288.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03879 09 145302379 145310671 Aip09g03879 09 145302379 145310671 ECH
Aip05g01330 05 19494416 19502470 Aip09g03879 09 145302379 145310671 PCT