Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03877 ATGCTGCACCTCAAAATCTCTTGTGCTCCTTATCCTTTGTTTTGTTTGATCACTCTGAGCGTTGTTGCATTAATAACTACAGAAGCAGTTACTGATGAGACCTACGCGGTTCACTACTGTCCAAACACAACAACTTATTCTCCCAACAGCATTTACCAAACTACCCTCAACCAGCTCCTTTCATGGCTCACGTCAAACTCCTCAACCGCCAAAAACGGTTACTACAACACTACCATCGGCGCCAACACCCCTAACAACACCATCTACGGCTCCTTCCTCTGCCGTGGAGACCTCACCACCACCGCATGCCACGACTGCGTTTCCGCCGCAGCCAAAAAGGTTCTTCAACCTGATTTCTGCCCCGTGGGGAAGGAATCGGTTATATGGTTCGCAGAGTGCATGGTTCGTTACTCGGACCAACCGTTTTTCTCTGTAGCTGCTGAGGTTCCTGTGTATTCCCTATCCAACACGGGAAACGTGCCAGATGAAAGCCACTTCATGACGGTGTTAGGAGACACGATGAATTCGGCGGCGGAACAGGCGGCCAAGGGTGGCGCTGACAAGAAGTTTGGTACCAAAGAAGCAAACATTTCAAGCTTCCAGACTCTATACACGCTAGCACAGTGCACACCGGATTTGTCAGAATTTGGATGCCAGAAATGCCTCAAAATAGGAACTGGACAATTACCTTCTTGCTGTGATGGAAAGTTAGGAGGAAGAGTGCTGATTCCAAGTTGTAATGTTAGGTTTGAATTGTACCCCTTTTACCATGAGATGGATGTCCCTCTGCCACCACCACAGTCCAACCCAAACCCAAAAGATAAATCCAATATAGATGCAGTATTAATAATCGCAATTGTAGTTCCAATTGTGATTGTTTTGTTGCTTTTCTTGGCTGCCTTATGGATCATATCTACACGGACAAGAAGGAAGAAGAACAATTCGGTGCCAGAGGGAACTCTGGAAAGTAGTGTTCAAATTTCCAGCGTAGAGTTCTTGCAATTTGATGTTGATACAATCATAGAGGCCACAAACAACTTTTCTGGTGGCAATAAATTAGGGGAAGGAGGATTTGGTGAGGTTTACAAGGGTACACTACCTAATGGGCAAGATATTGCTGTGAAGAGACTATCAAGAAACTCTAGACAAGGAATAATTGAGTTTAAGAATGAGGTACTTTTGGTAGCCAAACTCCAACATAGAAATCTTGTTAGGCTACTCGGATTTTGCTTGGATGGAGAAGAGAAAATGCTCATCTATGAATTTGTTGCAAACAAAAGCTTGGACCGTTTTCTATTTGATGCCAGCAAACAACACCAGTTGAGTTGGCCAAGACGATACAAAATCATAGAAGGAATTGCTCGAGGGATACTCTATCTTCATGAAGATTCCCGACTCAGAATCATACATCGTGATCTTAAAGCCGGTAATATACTACTAGACGAGGACTCAAACCCAAAAATCTCAGATTTTGGAATGGCAAGACTTTTCGGTGCTGATCAAACTCAAGCAAACACCAATAGAGTTGTTGGAACAATTGGATACATGCCTCCAGAATATGCAATGCGTGGACAATTTTCTGATAAAACGGATGTCTACAGCTTCGGTGTCTTAGTTCTAGAGATAATATCAGGAAAGAAGATAACATCCTTCTATGATTCAGGCTATGCAGGGGACCTCTTGAACTATGCTTGGAAACATTGGAGAGATGGGACCCCATTGGAGCTACTAGACATGAGTCTGAGAGAATCATATTCAAGAGCCGAAGTGATTAAATGCATCCATGTTGGGTTATGCTGTGTACAAGAGGATCCAGCACAAAGACCAACAATGCAGGCTATAGTTCTAATTCTAAATAGCCATACAGTTACTCTTGCAAGTCCTGCACAACCACCAGCTGGTTATATTGGGAGCAGATCTCACTCCAATTTCCCAACAAAAGAGATGGTGAACTCATCATCAGACAAGTCTACAAACACAAGCACAAGTCAGAGTTCAATAAATCGGCCAACTTTGCCATCAAAGGAGATGGAAAACTCAAATGTGTCTACCTCCATTACAGAGGTCTACCCTCGCTAG 2079 0.4363 MLHLKISCAPYPLFCLITLSVVALITTEAVTDETYAVHYCPNTTTYSPNSIYQTTLNQLLSWLTSNSSTAKNGYYNTTIGANTPNNTIYGSFLCRGDLTTTACHDCVSAAAKKVLQPDFCPVGKESVIWFAECMVRYSDQPFFSVAAEVPVYSLSNTGNVPDESHFMTVLGDTMNSAAEQAAKGGADKKFGTKEANISSFQTLYTLAQCTPDLSEFGCQKCLKIGTGQLPSCCDGKLGGRVLIPSCNVRFELYPFYHEMDVPLPPPQSNPNPKDKSNIDAVLIIAIVVPIVIVLLLFLAALWIISTRTRRKKNNSVPEGTLESSVQISSVEFLQFDVDTIIEATNNFSGGNKLGEGGFGEVYKGTLPNGQDIAVKRLSRNSRQGIIEFKNEVLLVAKLQHRNLVRLLGFCLDGEEKMLIYEFVANKSLDRFLFDASKQHQLSWPRRYKIIEGIARGILYLHEDSRLRIIHRDLKAGNILLDEDSNPKISDFGMARLFGADQTQANTNRVVGTIGYMPPEYAMRGQFSDKTDVYSFGVLVLEIISGKKITSFYDSGYAGDLLNYAWKHWRDGTPLELLDMSLRESYSRAEVIKCIHVGLCCVQEDPAQRPTMQAIVLILNSHTVTLASPAQPPAGYIGSRSHSNFPTKEMVNSSSDKSTNTSTSQSSINRPTLPSKEMENSNVSTSITEVYPR 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03877 692 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 651 - -
Aip09g03877 692 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 651 - -
Aip09g03877 692 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
Aip09g03877 692 Pfam Salt stress response/antifungal 158 253 IPR002902 -
Aip09g03877 692 Pfam Salt stress response/antifungal 40 139 IPR002902 -
Aip09g03877 692 Pfam Protein tyrosine and serine/threonine kinase 350 616 IPR001245 GO:0004672|GO:0006468
Aip09g03877 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Aip09g03877 692 CDD STKc_IRAK 353 619 - -
Aip09g03877 692 Gene3D Phosphorylase Kinase; domain 1 307 422 - -
Aip09g03877 692 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Aip09g03877 692 Gene3D - 148 255 IPR038408 -
Aip09g03877 692 Gene3D - 32 142 IPR038408 -
Aip09g03877 692 ProSiteProfiles Gnk2-homologous domain profile. 34 142 IPR002902 -
Aip09g03877 692 MobiDBLite consensus disorder prediction 636 692 - -
Aip09g03877 692 SMART serkin_6 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03877 692 ProSiteProfiles Protein kinase domain profile. 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g03877 692 Gene3D Transferase(Phosphotransferase) domain 1 423 627 - -
Aip09g03877 692 SUPERFAMILY Protein kinase-like (PK-like) 332 636 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03877 Aip-Chr9 145296590 145300593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03877 4 692 Receptor kinase-like Gene Family AT4G05200 48.575 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip09g03877 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03877 - - cit:102622618 713.375