Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03853 ATGTACTCTGAAAATCTGATAGTGTCCGCTGAAAACCCTAGACCCTTCGCGTTTCAGCAACATCTATCTTCTTCTTCGTCTACTACTACTTCGGCCAACGCGAAACCCATGAGCAATGAGATCGCACAGAAGCCTCCCCCTTCCATTCTCGTTGGCAGGTTCAAGGCTATGCTCAAGCAGCGCGACGACGAGCTCAGAGCCACCGCCGGTCACGTGCCGCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTGCAATCTGAAGGCCATTATCAACGATCTCACCTTCATCGCTGAGCAGCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCGAGGTGCCTGCAGAGCAAAAGCTTCCTTCACTCTATCTTTTGGACAGTATAGTGAAGAACTTTGGACAGGAATATGTTAGATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAAAAGTCTTTCCACCGTCTGTCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTAGTTAATAATAGTCAATCGTCCAACATGAATCCCCTCAGAGCATCTGAATCTCCTAGACCAAGTCATGGCATACATGTAAATCCAAAGTACCTGCGGCAGTTGGAGCGCTCAACTGTGGATAGTGTTGGTGGTGAAAAGTTTGACATAGCAGGAAAGGCTAGTAATACAAATTTTGGCATTGTAGCTAATAAGACGAATCAATTTGTATCTAGCAGACTTGGAATATCCTCTTCTCCTTCAAGAATTGGTCTAGATAGGCCTTTGTCAGTAGCAGATGAGTATGCAGTTGACAGTTCTTCTGGAAGGATGGTTGAGAGAGAGTCTCCTCATAATTATGGAGTACCAAGAGTAGTAGGTAGAGAGGAAGAATTGGGTGAATGGCAGCGAAAGCAGTACCCTGGTGATGTTCGAAATCGATTTCAAACTCCTTTGACATACAGCCTTAGTAATGGACATCCGCGTCAAAGTCCAAGAGCTTTAATTGATGCGTATGGCAGTGACAAAAGCCAAGAAACTTCAAGCACCAAGCCTCTTATACTTGATCGGCTAGATAGAAATGGTATCGACAACAAAGTGACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGGCTTCTTGCAATCAACTGCTTTTTCCAGGGATAAGCCTGTTGCAGTAGCAGCTAATGCAATTTTGTCAGAGCAAGATACAAGGAAGGGTTGGTCTGGTGGGTCTCAGCTTCCTCCAGTAGATGATTCTTCTGTCATAGCAGCAGATGCATTTCCCCATTCAGTTTATGGTCGTGTATCCATGGGGCAGGTATCTGGTTTCCAAAATCAAATAAATCAGAGTCTGGGTTCCCGTCCACCTCATGATGCTTGGAAGGTTTCTCAATCACAAACCATGCTTAATATTAGGGGCCGAGGAAGAACTCTTTTGATGCCTCCTATTGATAACAATCCCAATAATGATGTAAACCCCTATGGGATTCGACCTGCAGTGTCAAGGATGGTTTCTGGTATTGCCTCTAACGTAGAGCCTCGTCCACCAGTTTTGCCTGGATCTTTTGAAATAAGACCTTCTGTAACTGTGCATGGCACTCGTCCTCCCACCTTAAATCCAATATTTCCACCGCAAAAACATGTTAGAAGTCAATTTGATGCAATAAATACCAGTAATCCCATTATGAATCATGGCCCAAATAAATCTCTGTTCATGCCTGAACAGCCAGGGCTGGACATTGTTGAAAACAGGGATGCCAGTAAAGGAAAGATACATCAGTTGCCTAATCAGCTGGCTGGATTGCTTCCATCCAACCTGCAAAACCTTGGACAAACACCACAACATTTTTTCCCATCTCGGGATCCATCATCCTCACAATTTGGTCATGGAAACTCTCTGCAAGGGCATGGTCCTTCTTTAAGTGCAGCTATGTCAAATCCATTACCTATTACACAGTTTCCTTTACCAGTCCAAGGTATTGCAAATAATTCCTTACAATTACAGGGGGGAGTCCATCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCTTCTCAAATGATACCACATCCAAATGCTGGTCCATATGTATCAAACCAACAGCCGGCTGTTGCATATACTAATTTAATTAGTTCGCTTATGTCCCAAGGCGTAATCTCATTGGCTAATCAACCCTCTGGACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGATTCGTTATGAGTCTGCAATCAGTGCCTTGTATGGAGATCTCCCTAGACAATGCACGACTTGTGGACTAAGATTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTAACAAAGAACAGGATGTCCAAAAGTCGCAAACAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCGGAGGCACTGGGAACAGAATCGGTTCCTGGTTTTCTGCCAACCGAGACCGTAGAAGAAAAAAAAGATGATGAAGAGTTGGCAGTGCCAGCTGAAGAGGACCAGAATACATGTGCATTATGTGGTGAGCCTTTCGATGAGTTTTACAGTGACGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCCACCGGAGCAACAGTGGGCATGGACAGGTCGCAGTTAGGTCCCATTATTCATGCCAAATGCAGATCAGACACTAATACGTCCCCCTCTGAAGATTTCGGGTTGGATGAAGGGGGTGCCAATGAAGAGGGCAGCCAAAGAAAACGAATGCGGAGTTGA 2919 0.4563 MYSENLIVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQKPPPSILVGRFKAMLKQRDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNLKAIINDLTFIAEQQREHARGIADAICARILEVPAEQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSNMNPLRASESPRPSHGIHVNPKYLRQLERSTVDSVGGEKFDIAGKASNTNFGIVANKTNQFVSSRLGISSSPSRIGLDRPLSVADEYAVDSSSGRMVERESPHNYGVPRVVGREEELGEWQRKQYPGDVRNRFQTPLTYSLSNGHPRQSPRALIDAYGSDKSQETSSTKPLILDRLDRNGIDNKVTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQSTAFSRDKPVAVAANAILSEQDTRKGWSGGSQLPPVDDSSVIAADAFPHSVYGRVSMGQVSGFQNQINQSLGSRPPHDAWKVSQSQTMLNIRGRGRTLLMPPIDNNPNNDVNPYGIRPAVSRMVSGIASNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPIFPPQKHVRSQFDAINTSNPIMNHGPNKSLFMPEQPGLDIVENRDASKGKIHQLPNQLAGLLPSNLQNLGQTPQHFFPSRDPSSSQFGHGNSLQGHGPSLSAAMSNPLPITQFPLPVQGIANNSLQLQGGVHPPLPPGRPPAPSQMIPHPNAGPYVSNQQPAVAYTNLISSLMSQGVISLANQPSGQDSVGTEFNPDILKIRYESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETVEEKKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGATVGMDRSQLGPIIHAKCRSDTNTSPSEDFGLDEGGANEEGSQRKRMRS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03853 972 Pfam CID domain 93 195 IPR006569 -
Aip09g03853 972 SUPERFAMILY ENTH/VHS domain 75 200 IPR008942 -
Aip09g03853 972 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Aip09g03853 972 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 44 947 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip09g03853 972 MobiDBLite consensus disorder prediction 940 972 - -
Aip09g03853 972 SMART 558neu5 79 201 IPR006569 -
Aip09g03853 972 Gene3D - 74 202 IPR008942 -
Aip09g03853 972 MobiDBLite consensus disorder prediction 21 38 - -
Aip09g03853 972 ProSitePatterns Zinc finger C2H2 type domain signature. 806 826 IPR013087 -
Aip09g03853 972 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 44 947 - -
Aip09g03853 972 MobiDBLite consensus disorder prediction 21 42 - -
Aip09g03853 972 CDD CID_Pcf11 81 201 - -
Aip09g03853 972 MobiDBLite consensus disorder prediction 659 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03853 Aip-Chr9 145133941 145139887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03853 744 972 C2H2 Transcription Factor Family AT4G04885 71.616 6.73e-109 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03853 K14400 - gmx:100794796 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03853 09 145133941 145139887 Aip09g03853 09 145133941 145139887 ECH