Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03852 ATGTCAAACCATTCCATGATGAACAACAATTCCTCAGGTAGTGATTATTTTCTAAGGAAAATTCTAGAGATACAAGATTTTGAGGTTGACACTGACAGCCACACCAACATGCAACAACAACCTCCTCCTGGCTACGGCAGTGATCACCACAAGAAGAAGCGCTACCAGCGCCACACGGCATATCAGATACAAGAGATGGAAACGTTCTTCAAGGCGTGCCCTCACCCAGATGAGCAGCAAAGGATAGAGCTGGGTAATGTTTTGGGATTAGACCATTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGAACCCAACTCAAGAATCAATACGAACGCAACGAGAACTTTGTACTGAAGAATGAGAATGAGGAGCTTCGAGCCGAGAACGAGAACTACAAGGAGATCCTAAATAGTATAAGATGTCATGGCTGCGGAGGCCCACCTCCTCCTCCATTGACCTATGACCAGATGAAGCAGGAGAATAACAAGCTAAGAGAACAGATTGAGTGGATGTCAACCATGATGTCTAACTGTGTTCTACAAGAGCCAGATAATACTTCCAACCCCAACATCACCGTGCCTCAGAATGTGCCTAATATAGAATCATTTCAGCAAAACAACACCAATAACATGATGCCTCGGACTCAGAGTGTGCCTAATCAAGAACTTGGTAACATGGCATCACCACCTCAGAGCAATAACATTGACATGCTGTCTCCAAGTATGTTTAATCAAGGAATTATTGACAGCATGCCATTGACTCAGCAGAACAATGACATTGACATGCCTCGGAATGTGATGAATCAAGGAATTGTCAAAGACATGCCATCATCTCAGGCTCACAACAATGACATTAACGTGACTCCGCCTATGAGTATGTTAAATCAGGGAATTGGTGATAACATTGCCATTATTCCTCCTAATGTGCTTGATCAAGGAAATTGTAGCGTGCCATCATCATCATCTCAACACAACAACGAAATTTACATTAACCTGCCTTTGAGTTCGCTTAATCAAGATGTTGGTAGCTATGGAGCAAAGTCAAAAGACAAAGCAGGGGAAACGAGTAGTGGTAGTGACCCTCTAATTAGGTCACTCCCAGTTTCTAACAAAGCCATGATCGAGGAGCTTGCGGCTGCGTCACTGGAGGAACTCAAAGCCTTGGTTCAAGCAGGGGAGCCCATGTGGGTCAGTGGGGCCCACAACTCTGAAACTATCAACGAACAAGAATACTATAGGACTTTCCCTGGTGGAATTGGTCCAAGACTCTTGGGGTATAAATCTGAATCTTCAAGGGAATCCAGGGTCATCAACATGAATCACGTTAACCTCGTTGAGATCCTTAATGATGTGGATCTATGGTCACGTGTGTTTTGCAGCATTGTTTCAAAAGCAGCAGGATTTCAAGTCCTATCAACTGGACAGGCAGGAAGTTATGATGGAAACTTGCAAGTGGTGTCATCAGAGTTCCAAATGCCAACACCACTTGTTCCTGCTCGCGAGTACTATTTCCTAAGGTACTGCAAGAAGCTCCAAGATGGGAGATGGGTGGTGGTCGATGCTTCCCTGGAAACTTCACAACCAAATGCAACAATCCCTCCGACCCGAAGAAGGCCCTCTGGTTGCCTGATTCAGGCATCTCCAGATGGTTACTCAACAAAGGTTACCTGGGTTGAACATGTAGAAGTGGATGACAGAGCACTAATGGTGAATAGTATGTATAAGCCTCTAGTTGAATCTGGCTTAGCCTTTGGAGCTAGACGCTGGGTCGCACAATTAGATAGAAGATGCGAACGTATTGCAAGTGCAGTACAATCCACCACCATACTGCAACAACAAGAAGACCAACTTAGTGTGACGAGTGTTGAGGGCAAAAAGGGGTTGGTGAAGCTGGCAGAGAGAATGGTTATGGACTTTTTAAGTGGTGTTGGTGCTTCAACAGTAGAAAATTGGGCAATCGTAACTCCATCAACAAATCACAGCAATATAAGAATCATAACCAGAAAGGTTGAGGACGATCCAGGTAGACCTTCCGGTATAGTTATCGGTGCCGCAACTTGTTTCCACCTCGCAGTTCCTCCAAACAGCTTCTTTGATAGGGTTCGAACTGCAAACGCAAGAGCAGAGTGGGATGTTCTCTGTACCGGAGGTGTTGCTGAGGAATTTGCACACATAAAAAATGGTCGCGACCCTGGGAACTGTATCACATTATTCCGTATCAAGAGTTCAGATGCGAAGAACAACGGGATGATAATAGTTCAAGAGAGTAGCAGCGATTCAACAGGGTCATTTGTGATATACGCACCGGTTGATATGAATTCGATCAATGCAGTGATTGGAGGGAGAGATCCCGATGAACTTCCGATTTTGCCCTCGGGAATGGCGATTCTTCCAGATGGAGGTGGAGGTTGTTTGGTGACGTTGGCATTCCAGATATTGATCGAGTCAGATCCAACAAAGAAGATATCGATCTGTTCAGTGAGCACTATTAACCAGTTGGTTAAGGTTACGGTTAACAACATCAAAGCTCTATTCTAA 2538 0.4464 MSNHSMMNNNSSGSDYFLRKILEIQDFEVDTDSHTNMQQQPPPGYGSDHHKKKRYQRHTAYQIQEMETFFKACPHPDEQQRIELGNVLGLDHLQIKFWFQNKRTQLKNQYERNENFVLKNENEELRAENENYKEILNSIRCHGCGGPPPPPLTYDQMKQENNKLREQIEWMSTMMSNCVLQEPDNTSNPNITVPQNVPNIESFQQNNTNNMMPRTQSVPNQELGNMASPPQSNNIDMLSPSMFNQGIIDSMPLTQQNNDIDMPRNVMNQGIVKDMPSSQAHNNDINVTPPMSMLNQGIGDNIAIIPPNVLDQGNCSVPSSSSQHNNEIYINLPLSSLNQDVGSYGAKSKDKAGETSSGSDPLIRSLPVSNKAMIEELAAASLEELKALVQAGEPMWVSGAHNSETINEQEYYRTFPGGIGPRLLGYKSESSRESRVINMNHVNLVEILNDVDLWSRVFCSIVSKAAGFQVLSTGQAGSYDGNLQVVSSEFQMPTPLVPAREYYFLRYCKKLQDGRWVVVDASLETSQPNATIPPTRRRPSGCLIQASPDGYSTKVTWVEHVEVDDRALMVNSMYKPLVESGLAFGARRWVAQLDRRCERIASAVQSTTILQQQEDQLSVTSVEGKKGLVKLAERMVMDFLSGVGASTVENWAIVTPSTNHSNIRIITRKVEDDPGRPSGIVIGAATCFHLAVPPNSFFDRVRTANARAEWDVLCTGGVAEEFAHIKNGRDPGNCITLFRIKSSDAKNNGMIIVQESSSDSTGSFVIYAPVDMNSINAVIGGRDPDELPILPSGMAILPDGGGGCLVTLAFQILIESDPTKKISICSVSTINQLVKVTVNNIKALF 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03852 845 SMART START_1 376 599 IPR002913 GO:0008289
Aip09g03852 845 Coils Coil 154 174 - -
Aip09g03852 845 MobiDBLite consensus disorder prediction 33 55 - -
Aip09g03852 845 Pfam Homeodomain 52 107 IPR001356 GO:0003677
Aip09g03852 845 MobiDBLite consensus disorder prediction 341 364 - -
Aip09g03852 845 Pfam START domain 377 599 IPR002913 GO:0008289
Aip09g03852 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 183 - -
Aip09g03852 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 348 843 - -
Aip09g03852 845 Coils Coil 115 142 - -
Aip09g03852 845 SUPERFAMILY Bet v1-like 371 601 - -
Aip09g03852 845 CDD START_ArGLABRA2_like 371 598 - -
Aip09g03852 845 Gene3D - 35 123 - -
Aip09g03852 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 348 843 IPR042160 -
Aip09g03852 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 183 IPR042160 -
Aip09g03852 845 SUPERFAMILY Homeodomain-like 46 111 IPR009057 -
Aip09g03852 845 Gene3D - 435 594 IPR023393 -
Aip09g03852 845 SMART HOX_1 51 113 IPR001356 GO:0003677
Aip09g03852 845 CDD homeodomain 52 109 IPR001356 GO:0003677
Aip09g03852 845 ProSiteProfiles START domain profile. 367 602 IPR002913 GO:0008289
Aip09g03852 845 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Aip09g03852 845 SUPERFAMILY Bet v1-like 624 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03852 Aip-Chr9 145129031 145132430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03852 328 843 Homeobox Transcription Factor Family AT4G04890 51.667 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip09g03852 START 5.3e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03852 K09338 - gmx:100782240 560.836