Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip09g03850 | ATGGCAACAGCACAACAAGAATCAGGATCAGGATCAGGATCAGAAACAGCCATTGGAGTTAACGGCGTTGAAGACTCCTACTTCTCAGCTCTCTTTGATGATGAAGGTAACCTCATCCCCATCTCCGATGACAAGTACGCTGATGAATTGCAGTTACAAGAGACCATCATGTCCTCCTTGATCGCTTCTCAAAGCACCATCGAAGGCTCATCATCATCAAAAACCGTTCGTTGCCTTCCATCTTCATCAACACCTTCGTCATCACGACCAGTCTTTGTTGTCCCCAAAACCGAGTACATAGAGCTTCTGGATGACGACGAAATGCTTATCGTATGTGAGATTTGTGCAGAAACCAAAGGGACTGATCAGATGTTCAGGAACAAGAAATGTGATCACTCCTTCTGCTCTGACTGTGTCACCAAGCATGTGGCCACAAAGATCCAAGAGAGCTTAACGCTTGTTCCTTGCCCCGGATTGAACTGCAAGGGCATGTTGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGGTTCTTGATAGGTGGGACGATGCACTCTGTGAGGCTCTGTTTCTTGCGGTTCCGAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTAACGAGAATGAGGGCGGTGAAGGGATTATCAGGGAAGCTGAGTGCCCATTTTGCCACAGGCTCTTCTGTGCCAGGTGTTGTGTTCCATGGCACCCTGGGGTTGAGTGTAACGTGTTGCAGTCACTGAATGAGGATGAGAGAGGGAGGGAGGATCTTCTTCTTAGGGACCTTGCTGCTCAAAAGAAATGGAATAGGTGTCCCAGATGCAAGTTCTATGTGGAGAAGACTGAAGGGTGCTTGCATATTACATGCAGGTGCCGATTCCAGTTTTGCTATGCTTGTGGTGAACCTTGGAGTAGCACTCATGGTGGATGCCAAAGGAATTAG | 954 | 0.4811 | MATAQQESGSGSGSETAIGVNGVEDSYFSALFDDEGNLIPISDDKYADELQLQETIMSSLIASQSTIEGSSSSKTVRCLPSSSTPSSSRPVFVVPKTEYIELLDDDEMLIVCEICAETKGTDQMFRNKKCDHSFCSDCVTKHVATKIQESLTLVPCPGLNCKGMLELDSCRPMLPKEVLDRWDDALCEALFLAVPKFYCPFRDCSAMLLNENEGGEGIIREAECPFCHRLFCARCCVPWHPGVECNVLQSLNEDERGREDLLLRDLAAQKKWNRCPRCKFYVEKTEGCLHITCRCRFQFCYACGEPWSSTHGGCQRN | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip09g03850 | 317 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 36 | 305 | - | - | |
Aip09g03850 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 190 | IPR013083 | - | |
Aip09g03850 | 317 | SUPERFAMILY | RING/U-box | 184 | 249 | - | - | |
Aip09g03850 | 317 | Gene3D | - | 243 | 317 | - | - | |
Aip09g03850 | 317 | ProSiteProfiles | TRIAD supradomain profile. | 108 | 317 | IPR044066 | - | |
Aip09g03850 | 317 | SUPERFAMILY | RING/U-box | 109 | 189 | - | - | |
Aip09g03850 | 317 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 36 | 305 | IPR031127 | GO:0004842|GO:0016567 | |
Aip09g03850 | 317 | Pfam | Zinc finger, C3HC4 type (RING finger) | 112 | 151 | IPR018957 | GO:0046872 | |
Aip09g03850 | 317 | ProSiteProfiles | Zinc finger RING-type profile. | 112 | 157 | IPR001841 | - | |
Aip09g03850 | 317 | SUPERFAMILY | RING/U-box | 256 | 315 | - | - | |
Aip09g03850 | 317 | Pfam | IBR domain, a half RING-finger domain | 264 | 314 | IPR002867 | - | |
Aip09g03850 | 317 | Pfam | IBR domain, a half RING-finger domain | 197 | 245 | IPR002867 | - | |
Aip09g03850 | 317 | ProSitePatterns | Zinc finger RING-type signature. | 130 | 139 | IPR017907 | - | |
Aip09g03850 | 317 | SMART | ibrneu5 | 255 | 314 | IPR002867 | - | |
Aip09g03850 | 317 | SMART | ibrneu5 | 180 | 245 | IPR002867 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip09g03850 | Aip-Chr9 | 145096735 | 145098292 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip09g03850 | 112 | 306 | C3H Transcription Factor Family | AT2G19610 | 25.248 | 1.96e-14 | 71.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip09g03850 | K11975 | - | qsu:112001859 | 350.517 |