Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03850 ATGGCAACAGCACAACAAGAATCAGGATCAGGATCAGGATCAGAAACAGCCATTGGAGTTAACGGCGTTGAAGACTCCTACTTCTCAGCTCTCTTTGATGATGAAGGTAACCTCATCCCCATCTCCGATGACAAGTACGCTGATGAATTGCAGTTACAAGAGACCATCATGTCCTCCTTGATCGCTTCTCAAAGCACCATCGAAGGCTCATCATCATCAAAAACCGTTCGTTGCCTTCCATCTTCATCAACACCTTCGTCATCACGACCAGTCTTTGTTGTCCCCAAAACCGAGTACATAGAGCTTCTGGATGACGACGAAATGCTTATCGTATGTGAGATTTGTGCAGAAACCAAAGGGACTGATCAGATGTTCAGGAACAAGAAATGTGATCACTCCTTCTGCTCTGACTGTGTCACCAAGCATGTGGCCACAAAGATCCAAGAGAGCTTAACGCTTGTTCCTTGCCCCGGATTGAACTGCAAGGGCATGTTGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGGTTCTTGATAGGTGGGACGATGCACTCTGTGAGGCTCTGTTTCTTGCGGTTCCGAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTAACGAGAATGAGGGCGGTGAAGGGATTATCAGGGAAGCTGAGTGCCCATTTTGCCACAGGCTCTTCTGTGCCAGGTGTTGTGTTCCATGGCACCCTGGGGTTGAGTGTAACGTGTTGCAGTCACTGAATGAGGATGAGAGAGGGAGGGAGGATCTTCTTCTTAGGGACCTTGCTGCTCAAAAGAAATGGAATAGGTGTCCCAGATGCAAGTTCTATGTGGAGAAGACTGAAGGGTGCTTGCATATTACATGCAGGTGCCGATTCCAGTTTTGCTATGCTTGTGGTGAACCTTGGAGTAGCACTCATGGTGGATGCCAAAGGAATTAG 954 0.4811 MATAQQESGSGSGSETAIGVNGVEDSYFSALFDDEGNLIPISDDKYADELQLQETIMSSLIASQSTIEGSSSSKTVRCLPSSSTPSSSRPVFVVPKTEYIELLDDDEMLIVCEICAETKGTDQMFRNKKCDHSFCSDCVTKHVATKIQESLTLVPCPGLNCKGMLELDSCRPMLPKEVLDRWDDALCEALFLAVPKFYCPFRDCSAMLLNENEGGEGIIREAECPFCHRLFCARCCVPWHPGVECNVLQSLNEDERGREDLLLRDLAAQKKWNRCPRCKFYVEKTEGCLHITCRCRFQFCYACGEPWSSTHGGCQRN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03850 317 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 36 305 - -
Aip09g03850 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 190 IPR013083 -
Aip09g03850 317 SUPERFAMILY RING/U-box 184 249 - -
Aip09g03850 317 Gene3D - 243 317 - -
Aip09g03850 317 ProSiteProfiles TRIAD supradomain profile. 108 317 IPR044066 -
Aip09g03850 317 SUPERFAMILY RING/U-box 109 189 - -
Aip09g03850 317 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 36 305 IPR031127 GO:0004842|GO:0016567
Aip09g03850 317 Pfam Zinc finger, C3HC4 type (RING finger) 112 151 IPR018957 GO:0046872
Aip09g03850 317 ProSiteProfiles Zinc finger RING-type profile. 112 157 IPR001841 -
Aip09g03850 317 SUPERFAMILY RING/U-box 256 315 - -
Aip09g03850 317 Pfam IBR domain, a half RING-finger domain 264 314 IPR002867 -
Aip09g03850 317 Pfam IBR domain, a half RING-finger domain 197 245 IPR002867 -
Aip09g03850 317 ProSitePatterns Zinc finger RING-type signature. 130 139 IPR017907 -
Aip09g03850 317 SMART ibrneu5 255 314 IPR002867 -
Aip09g03850 317 SMART ibrneu5 180 245 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03850 Aip-Chr9 145096735 145098292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03850 112 306 C3H Transcription Factor Family AT2G19610 25.248 1.96e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03850 K11975 - qsu:112001859 350.517