Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03846 ATGAATCTGCCACCGGCACAGATCCGGTGGCGCCCAGCCGCAATCCCATTCCTTGTGGCGGTTCTCGTTCTCGCCACTATCTCTCCTTCCATCGCAATCTACTGCGACGAAGATGATTGCTACGATCTGCTTGGGGTAGCACAGAATGCTAATGCTTCAGAAATCAAGAAAGCTTACTACAAGCTCTCTTTGAAATATCACCCGGATAAGAACCCTGATCCAGAGTCCCGAAAGCTGTTTGTTAAAATTGCCAATGCTTACGAGATTTTGAAGGATGAGGCCACTCGAGAACAATACGATTATGCAATTGCGCATCCGGAGGAGGTGTTCTATAATACTGCTCGTTATTATCAAGCATACTATGGTCACAAGACGGATCCCCGTGCTGTCTTGGTCGGCCTCCTTCTTATTCTTTCAGCTTTCCAGTATCTAAATCAATCCACAAGNNNNNNNNNNNTTCTAGCTGTAGCCATGGTAAAGAAGACACCGGCATATAAAAATAGATTGAAGGCACTGGAACTGGAGCGCAGTGGGGGGAATACAAACAAGAAGAAGAGTCAGAAGAATACGGACAAAAAAATGGTGGAAGACCTCAGCAATGAACTTGAGCTGCAGATAACAGGAGCTGAAAAGCCCTCATTTTGGAAACTACTTGGTGTCCAATTTGTGCTTTTACCTTATACATTAGGAAAGATGCTGTTGTGGACTGGTTGTTGGATTTGGAGATATAAAGTGAAAAAGTGCTCATATTCTTCTGAAGATGCTTCATATCTGACACGAAGGGCCCTTTGTATTCCGGACGATAGATGGAGAAATATGGATGAAGCAACAAAGGAAGATCTGCTGCTAAGACGCTTGTGGGAGAAATCAAATTTTGAAAGGTATGTAGCTGAGATGCGAAAAGAATCGAAGCGATTTCTCGTTCTCTCGCAATACCTCCCTCTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGGAAGACCATCACTCTCGAAGTCGAGAGCTCAGACACCATCGACAACGTTAAGGCAAAGATTCAAGACAAGGAAGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTTGTTAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTCCGATACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGATTATAATATCCAAAAGGAGTCCACACTCCACTTGGTCTTGCGGCTTCGTGGTGGCATGCAGATCTTTGTAAAGACCCTTACCGGGAAAACCATCACCCTTGAGGTAGAGAGCTCCGACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCCACACTCCACTTGGTCTTGCGGCTTCGTGGTGGCATGCAGATCTTTGTGAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCCGACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAGCAAAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCAACCCTCCACCTTGTGTTGCGTCTCCGTGGTGGCATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAGGTGGAGAGCTCCGACACAATTGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGACCAGCAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGAAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCTCAGGGGAGGGATGCAGATTTTTGTGAAGACTTTGACCGGTAAGACCATCACCTTGGAGGTGGAGAGCTCCGACACCATTGACAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATCCCACCGGACCAGCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAAGATGGAAGGACCCTTGCTGACTATAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGTCTTCGTGGTGGATTCTAA 2322 0.4905 MNLPPAQIRWRPAAIPFLVAVLVLATISPSIAIYCDEDDCYDLLGVAQNANASEIKKAYYKLSLKYHPDKNPDPESRKLFVKIANAYEILKDEATREQYDYAIAHPEEVFYNTARYYQAYYGHKTDPRAVLVGLLLILSAFQYLNQSTXXXXXLAVAMVKKTPAYKNRLKALELERSGGNTNKKKSQKNTDKKMVEDLSNELELQITGAEKPSFWKLLGVQFVLLPYTLGKMLLWTGCWIWRYKVKKCSYSSEDASYLTRRALCIPDDRWRNMDEATKEDLLLRRLWEKSNFERYVAEMRKESKRFLVLSQYLPLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03846 773 PANTHER UBIQUITIN 13 297 523 - -
Aip09g03846 773 PANTHER UBIQUITIN 13 391 599 - -
Aip09g03846 773 CDD Ubl_ubiquitin 393 468 - -
Aip09g03846 773 ProSiteProfiles Ubiquitin domain profile. 697 772 IPR000626 GO:0005515
Aip09g03846 773 SUPERFAMILY Ubiquitin-like 620 696 IPR029071 -
Aip09g03846 773 SUPERFAMILY Ubiquitin-like 545 620 IPR029071 -
Aip09g03846 773 SMART ubq_7 545 616 IPR000626 GO:0005515
Aip09g03846 773 SMART ubq_7 621 692 IPR000626 GO:0005515
Aip09g03846 773 SMART ubq_7 317 388 IPR000626 GO:0005515
Aip09g03846 773 SMART ubq_7 393 464 IPR000626 GO:0005515
Aip09g03846 773 SMART ubq_7 697 768 IPR000626 GO:0005515
Aip09g03846 773 SMART ubq_7 469 540 IPR000626 GO:0005515
Aip09g03846 773 ProSitePatterns Ubiquitin domain signature. 647 672 IPR019954 -
Aip09g03846 773 ProSiteProfiles Ubiquitin domain profile. 469 544 IPR000626 GO:0005515
Aip09g03846 773 CDD DnaJ 39 92 IPR001623 -
Aip09g03846 773 PRINTS Ubiquitin signature 327 347 IPR019956 -
Aip09g03846 773 PRINTS Ubiquitin signature 369 390 IPR019956 -
Aip09g03846 773 PRINTS Ubiquitin signature 348 368 IPR019956 -
Aip09g03846 773 CDD Ubl_ubiquitin 545 620 - -
Aip09g03846 773 ProSiteProfiles Ubiquitin domain profile. 393 468 IPR000626 GO:0005515
Aip09g03846 773 ProSiteProfiles Ubiquitin domain profile. 621 696 IPR000626 GO:0005515
Aip09g03846 773 CDD Ubl_ubiquitin 697 772 - -
Aip09g03846 773 Pfam DnaJ domain 39 100 IPR001623 -
Aip09g03846 773 ProSiteProfiles Ubiquitin domain profile. 545 620 IPR000626 GO:0005515
Aip09g03846 773 SUPERFAMILY Chaperone J-domain 34 110 IPR036869 -
Aip09g03846 773 ProSiteProfiles dnaJ domain profile. 39 103 IPR001623 -
Aip09g03846 773 ProSitePatterns Ubiquitin domain signature. 419 444 IPR019954 -
Aip09g03846 773 SUPERFAMILY Ubiquitin-like 467 544 IPR029071 -
Aip09g03846 773 ProSiteProfiles Ubiquitin domain profile. 317 392 IPR000626 GO:0005515
Aip09g03846 773 PANTHER UBIQUITIN 13 525 749 - -
Aip09g03846 773 Gene3D - 545 620 - -
Aip09g03846 773 Gene3D - 313 392 - -
Aip09g03846 773 Gene3D - 697 773 - -
Aip09g03846 773 Gene3D - 621 696 - -
Aip09g03846 773 Gene3D - 469 544 - -
Aip09g03846 773 Gene3D - 393 468 - -
Aip09g03846 773 PANTHER UBIQUITIN 13 468 675 - -
Aip09g03846 773 PANTHER UBIQUITIN 13 676 772 - -
Aip09g03846 773 CDD Ubl_ubiquitin 317 392 - -
Aip09g03846 773 SUPERFAMILY Ubiquitin-like 303 392 IPR029071 -
Aip09g03846 773 ProSitePatterns Nt-dnaJ domain signature. 80 99 IPR018253 -
Aip09g03846 773 CDD Ubl_ubiquitin 469 544 - -
Aip09g03846 773 PANTHER UBIQUITIN 468 675 - -
Aip09g03846 773 PANTHER UBIQUITIN 676 772 - -
Aip09g03846 773 PANTHER UBIQUITIN 391 599 - -
Aip09g03846 773 SMART dnaj_3 38 95 IPR001623 -
Aip09g03846 773 CDD Ubl_ubiquitin 621 696 - -
Aip09g03846 773 SUPERFAMILY Ubiquitin-like 695 772 IPR029071 -
Aip09g03846 773 ProSitePatterns Ubiquitin domain signature. 571 596 IPR019954 -
Aip09g03846 773 SUPERFAMILY Ubiquitin-like 392 468 IPR029071 -
Aip09g03846 773 PRINTS DnaJ domain signature 75 95 IPR001623 -
Aip09g03846 773 PRINTS DnaJ domain signature 41 59 IPR001623 -
Aip09g03846 773 PRINTS DnaJ domain signature 59 74 IPR001623 -
Aip09g03846 773 Pfam Ubiquitin family 623 694 IPR000626 GO:0005515
Aip09g03846 773 Pfam Ubiquitin family 395 466 IPR000626 GO:0005515
Aip09g03846 773 Pfam Ubiquitin family 547 618 IPR000626 GO:0005515
Aip09g03846 773 Pfam Ubiquitin family 699 770 IPR000626 GO:0005515
Aip09g03846 773 Pfam Ubiquitin family 319 390 IPR000626 GO:0005515
Aip09g03846 773 Pfam Ubiquitin family 471 542 IPR000626 GO:0005515
Aip09g03846 773 ProSitePatterns Ubiquitin domain signature. 495 520 IPR019954 -
Aip09g03846 773 Gene3D DnaJ domain 26 126 IPR036869 -
Aip09g03846 773 ProSitePatterns Ubiquitin domain signature. 723 748 IPR019954 -
Aip09g03846 773 ProSitePatterns Ubiquitin domain signature. 343 368 IPR019954 -
Aip09g03846 773 PANTHER UBIQUITIN 297 523 - -
Aip09g03846 773 PANTHER UBIQUITIN 525 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03846 Aip-Chr9 145077672 145084880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03846 697 773 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.66e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03846 - K08770 gmx:121173310 885.174