Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03829 ATGTTGAAGCAGAAAAAGAAAACAACAGGGAGGAAGAGGATTGAGATCAAGAAGCTTGAGAAAGAAGCAAACAAGCAAGTCACCTTCTCAAAGCGGCGAGCCGGGATGTTCAAGAAAGCCAGTGAGCTATGCATATTATGCAATGCTCATGTTGGCATTATAGTGTTCTCGCCGGCCGACAAGTTGTTCTGCTTCGGAGAACCCAGCACGGAGGCCGTGGTGGAGCGGTACCTGAAAGGATCGCCAGATTTTGAGCCAATAAAGTCCTCCCAAAGGAAGAAGCCGGTGTCATGCGAAGAGCATAACAGAAAATACGAAGAGGCGATGAAGGCGTTGGAGTTGGAAAAGAAGAACAAGGCTGATGTTGAAGGTTTTGCTAAGGTTTGGGGGAGAGGAGAATGGTGGAATGAAGAGATTCATGAGATGAGTGTTGAGCAGTTGGAGCAGTTTTTGGTAGCCATTTATGAATTGAGGAGTAGGCTTCTTCAAAGGGCTGCTGAAATCATGATGATGCATGGAATGTTATAG 528 0.4621 MLKQKKKTTGRKRIEIKKLEKEANKQVTFSKRRAGMFKKASELCILCNAHVGIIVFSPADKLFCFGEPSTEAVVERYLKGSPDFEPIKSSQRKKPVSCEEHNRKYEEAMKALELEKKNKADVEGFAKVWGRGEWWNEEIHEMSVEQLEQFLVAIYELRSRLLQRAAEIMMMHGML 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03829 175 Gene3D - 22 105 IPR036879 GO:0003677|GO:0046983
Aip09g03829 175 PANTHER MADS BOX PROTEIN 7 171 - -
Aip09g03829 175 Coils Coil 98 122 - -
Aip09g03829 175 CDD MADS_MEF2_like 10 81 IPR033896 GO:0000977|GO:0045944
Aip09g03829 175 SUPERFAMILY SRF-like 10 81 IPR036879 GO:0003677|GO:0046983
Aip09g03829 175 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Aip09g03829 175 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Aip09g03829 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Aip09g03829 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 171 - -
Aip09g03829 175 Coils Coil 2 22 - -
Aip09g03829 175 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Aip09g03829 175 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Aip09g03829 175 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03829 Aip-Chr9 144881466 144881993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03829 8 166 Type I MADS-box Gene Family AT2G24840 41.718 6.80e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip09g03829 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03829 - - gmx:100814979 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03829 09 144881466 144881993 Aip09g03829 09 144881466 144881993 ECH
Aip05g01380 05 20592766 20593725 Aip09g03829 09 144881466 144881993 PCT