Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03826 ATGTCGAGTTCAAGAAGCGGTGCAAGGAAAAGCAGGGGTCGCCAAAGAATTGAGATGAAGAAGATGAGCAATGAAAGCAACCTCCAAGTCACGTTCTCTAAGCGTCGCAGCGGCTTGTTCAAGAAAGCAAGTGAGCTTTGCACCCTCTGCGGTGCTGACGTGGCACTCGTCGTGTTTTCTCCTGGCCAGAAAGTCTTTTCCTTCGGCCACCCAAACGTGGAAACCGTTATGGATCGTTACCTGTCACGTGCATCTACCCTCCCAAACTTATCCGGCACTTTGCAATTCATTGAGGCCCACCGCAACGCCAATGTGCGTGACTTCAACTCTCGACTCATGCAGGTGAATAACCAACTTGAAACTGAGAAGCAGCGTAGTGATCACTTGAATCATTTTCATAAGGTTGCCATGAATCAGTTCTGGTGGGCCTTGCCCATTGAAAATATGAGCAAGACCCAACTAAACCAGTTCAGGGCGGCACTTGAGAACCTTAAAAAGAGTGTCGCCCAACATGTCAATAGCCTCTTCGTTCACGAAAGTATTAACAACCCAAATCAATTCTTTGGTCAGTCATCTTCAAATGCTCTAGTGCCACATCAGCCTTCTCCTCCTCCTCTTCTTCCACCACCACCACCTTCCGCTCAACTAGTTCCTCAGTTGTTTGGTAATGGTCCACACTTTCTACAGCATCAGAGCCCTATGATGCTTCATGAGAGCCCTATGATGCAAAATCATATGTTTAACATGAACAACATTGGACAATTTGGGTCTTCTGCTGCTGGATTCCTTTGA 792 0.471 MSSSRSGARKSRGRQRIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGQKVFSFGHPNVETVMDRYLSRASTLPNLSGTLQFIEAHRNANVRDFNSRLMQVNNQLETEKQRSDHLNHFHKVAMNQFWWALPIENMSKTQLNQFRAALENLKKSVAQHVNSLFVHESINNPNQFFGQSSSNALVPHQPSPPPLLPPPPPSAQLVPQLFGNGPHFLQHQSPMMLHESPMMQNHMFNMNNIGQFGSSAAGFL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03826 263 MobiDBLite consensus disorder prediction 1 25 - -
Aip09g03826 263 Coils Coil 154 174 - -
Aip09g03826 263 MobiDBLite consensus disorder prediction 188 213 - -
Aip09g03826 263 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Aip09g03826 263 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Aip09g03826 263 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Aip09g03826 263 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Aip09g03826 263 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Aip09g03826 263 PANTHER MADS BOX PROTEIN 11 196 - -
Aip09g03826 263 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Aip09g03826 263 Gene3D - 92 189 - -
Aip09g03826 263 Gene3D - 24 90 IPR036879 GO:0003677|GO:0046983
Aip09g03826 263 MobiDBLite consensus disorder prediction 198 213 - -
Aip09g03826 263 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 196 - -
Aip09g03826 263 Coils Coil 105 125 - -
Aip09g03826 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Aip09g03826 263 SUPERFAMILY SRF-like 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03826 Aip-Chr9 144858869 144859660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03826 8 195 Type I MADS-box Gene Family AT5G60440 54.497 4.90e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip09g03826 SRF-TF 8.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03826 - - aip:107616132 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03826 09 144858869 144859660 Aip09g03826 09 144858869 144859660 ECH