Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03813 ATGTCTTCTTCCTCCGCTAGCATGCTGTGCGTCGAAGACGCCAGCGAAGCAATCTCCGACCACCCCTCTCCGCCATCATTGACAGCACTCTGGCAGCCCTACGACGATGATTCCGACATCAGCGAACTCATCGACGCAGAGGCGCGGCACATGGCGTCGGCGGATTACCTCCGGCGGTGCGGCGATGGTTCGGTGGACGTGAGCGCACGGTTGGACGCCATCAACTGGATGTTAAAGGTGCAGGCATTCTATGAGTTCCATCCAGTAACGGCCTTCCTTTCCATCAACTACATGGACCGCTTCCTCTCCCTCGTTTCTCTTCCGGTACGATCCAGGTGGGCATTTCAGCTACTATCCGTGGCGTGTTTGTCTGTGGCGGCGAAAATGGAGGAGCCACAAGTGCCTCTCTTGCTTGACCTCCAGCTTTTCCAGCCAACCTTGGTGTTTCACCCCAAAACCCTTCGCAGAATGGAGCTTTGCCTCTTGTCTAATCTCAACTGGACACTCCGTTCCGTTACCCCCTTCCATTACCTTCATTATTACCTCACCAACCTCCCTTCTTCTTCTTCTTCTTTCAACCGGTTACAGTTACTCTCCGCTGCCTCCGACCTCATCCTCGCCTCCACCCGTGTGATTAAGTTCTTGGAGTTTCCGCCGTCCGCCGTGGCAGCTGCCGCCGTCCTCTGCTCAGCTGGCCACCACCACCCTCATGTATTCCACCACAGAGTAAACCATGAAATGGTGAGACGCTGTCACCAACTAATGGAGGACTACGTGCTGGACACGTGTCCCGCATCCACCACCAAAGCCACGCGAGGCCACCCGCCACCTCAGAGCCCCGTCGCCGTCCTCGACGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCGCCAAACAAGCGGCTGCGATCCTCTCCCCCGGATTAATTTGGGGGGGATGGAAATGGTTGTGCGATTGGGCCGCAGGAAAAGGTACTGAGCCACAGGGGTTGAGCCACGTATCCAACAATCGGGCCTATAACGGGATATTGAAAACAACACAGCGTATCCCGTTGAAAACGCAAGGTGTGGTGGTGTTGGCTTTGGCGAGAATGGTAGATCTCGTGATGAGCGAGAAAAATGAAAAAAGAATTAAGAGGGAGGGTGGCGTGGACATGAGGAGTAGATGCCACGTAATGAGGGGCTTGAACGTTGAAGGAGTGTGTAATAAGGTGGTTTTGACCAACAATCAAGAAATGGCGTTGGAGGGTGGCACTGTATGA 1311 0.5164 MSSSSASMLCVEDASEAISDHPSPPSLTALWQPYDDDSDISELIDAEARHMASADYLRRCGDGSVDVSARLDAINWMLKVQAFYEFHPVTAFLSINYMDRFLSLVSLPVRSRWAFQLLSVACLSVAAKMEEPQVPLLLDLQLFQPTLVFHPKTLRRMELCLLSNLNWTLRSVTPFHYLHYYLTNLPSSSSSFNRLQLLSAASDLILASTRVIKFLEFPPSAVAAAAVLCSAGHHHPHVFHHRVNHEMVRRCHQLMEDYVLDTCPASTTKATRGHPPPQSPVAVLDVXXXXXXXXXXXXXXXXXXXXXXXXXXPAKQAAAILSPGLIWGGWKWLCDWAAGKGTEPQGLSHVSNNRAYNGILKTTQRIPLKTQGVVVLALARMVDLVMSEKNEKRIKREGGVDMRSRCHVMRGLNVEGVCNKVVLTNNQEMALEGGTV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03813 436 Pfam Cyclin, N-terminal domain 42 169 IPR006671 -
Aip09g03813 436 PANTHER CYCLINS 19 291 IPR039361 -
Aip09g03813 436 Coils Coil 286 286 - -
Aip09g03813 436 CDD CYCLIN 70 162 IPR013763 -
Aip09g03813 436 Pfam Cyclin, C-terminal domain 172 270 IPR004367 -
Aip09g03813 436 ProSitePatterns Cyclins signature. 70 101 IPR006671 -
Aip09g03813 436 PANTHER CYCLIN-D2-1-LIKE 19 291 - -
Aip09g03813 436 Gene3D - 42 235 - -
Aip09g03813 436 SMART Cyclin_C_2 172 287 IPR004367 -
Aip09g03813 436 SUPERFAMILY Cyclin-like 34 169 IPR036915 -
Aip09g03813 436 SMART cyclin_7 75 163 IPR013763 -
Aip09g03813 436 Gene3D - 53 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03813 Aip-Chr9 144765938 144768502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03813 40 269 Core Cell Cycle Gene Families AT1G70210 41.079 7.03e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03813 K18810 - gmx:100776178 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03813 09 144765938 144768502 Aip09g03813 09 144765938 144768502 ECH