Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03810 ATGGCCACTTTCGGAGGAACCCAGCAAAAGTGCATGGCATGTGACAAGACGGTCTACCTTGTTGATAAGCTTACCGCCGATGGCCGTATCTTTCATAAGGCCTGCTTCCGTTGCCACCATTGCCGGAGCACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTGCTGTACTGCAGACCACACTATGATCAACTCTTCAAGAGAACTGGTAGCTTAGACAAAAGCTTCGAAGGAATTCCCAAAGTCCAGAAAGAAAGACAGCCCTCTGAAATTGAGAGAAGTCCTAAACATATCTCAAACGTGTTCGTGGGCACCACAGACAAATGTGTTTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGGTTACAATTAATGGGACTCCTTACCATAGGGGCTGCTTCAAATGTACATATGGAGGTTGCACTATAAGCTCATCAAACTTTGTTACACATGAGGGGAAGCTCTATTGCAAACACCATCACATTCAACTCTTCAAAGAGAAAGGGAATTACAGCCAGCTCGAGAATGACGTCAACACCATTGCTATTTAA 555 0.4523 MATFGGTQQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGIPKVQKERQPSEIERSPKHISNVFVGTTDKCVCCKKTVYPTERVTINGTPYHRGCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDVNTIAI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03810 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Aip09g03810 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Aip09g03810 184 CDD LIM1_SF3 7 69 - -
Aip09g03810 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Aip09g03810 184 Pfam LIM domain 11 65 IPR001781 -
Aip09g03810 184 Pfam LIM domain 110 165 IPR001781 -
Aip09g03810 184 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Aip09g03810 184 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Aip09g03810 184 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Aip09g03810 184 Gene3D Cysteine Rich Protein 6 75 - -
Aip09g03810 184 Gene3D Cysteine Rich Protein 104 174 - -
Aip09g03810 184 PANTHER OS06G0237300 PROTEIN 1 180 IPR045268 GO:0051015
Aip09g03810 184 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 180 - -
Aip09g03810 184 SMART lim_4 10 62 IPR001781 -
Aip09g03810 184 SMART lim_4 109 161 IPR001781 -
Aip09g03810 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03810 Aip-Chr9 144754320 144756444 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aip09g03810 LIM 1.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03810 K09377 - gmx:100306027 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03810 09 144754320 144756444 Aip09g03810 09 144754320 144756444 ECH