Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03800 ATGGAACCAGCTCAGTTGATTTCTGAAGAATGGGGTTCTCTTAGTGGACTATACACAGCTGAGGAAGCTGAATTCATGACTCAGCTTCTTGCTGGTAACTATTCTGTCTCAGAGAAGCATTATTCTAGTGTTGCCATGCCACCATCTTCTGCATTTTGGCCTTGCCATGAATCCACAAAAGTGAGCTTCAAAGGCATCAATGGCAATTCCTATTTGCCTCCTTCACATATTGAAAATGCTAACTATCTATGCTTCTCCCAAGGGAGTAGCTCCAGTACTGAGAATGGTAATATCTATTCCTATGATACCACAACAAATTTCGACTCCATGTCCACCGATAATTGTTTAGAAGGTGCCAAGTTTAGTCCACAGAGTAATGATAACTCGAGGGCGCAGATAAGTGGAATCATTGATGAAGATGCTAAGATAGAGTGTGAAAGAATGGTTTTTGAACCTGCAGAGGACTTGGAGAACCCAACCAAAAGGCTTAGGAGTTCATCTGAGATACTAAAGAACAAGAAAAATGTTAAGACTACAAAGAAACCAAAATCTGCTTCCATTAGCAACATTAAAGAAGAAGATAGATGTCCTGGTCAGGGGGAAAACTTGAGCTGTTCCTGCTCAGAAGACGACTTGGACACGTGTCGTGAGCTAAATGAAGGAGAGTCTTCGAGCTTGAGCCTGAAATATTCTAAAGGTCTTCAGTTAAATGGAAAATCTAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTACAAAACTTAGTGCCTAATGGAACCAAGGTGGATATCAGCACAATGCTCGAGGAGGCTGTCCAATATGTGAAATTTTTACAGCTCCAAATTAAGCTCTTGAGCTCTGATGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACTTCAATATTACCACACCCAAATAG 993 0.4068 MEPAQLISEEWGSLSGLYTAEEAEFMTQLLAGNYSVSEKHYSSVAMPPSSAFWPCHESTKVSFKGINGNSYLPPSHIENANYLCFSQGSSSSTENGNIYSYDTTTNFDSMSTDNCLEGAKFSPQSNDNSRAQISGIIDEDAKIECERMVFEPAEDLENPTKRLRSSSEILKNKKNVKTTKKPKSASISNIKEEDRCPGQGENLSCSCSEDDLDTCRELNEGESSSLSLKYSKGLQLNGKSRSSRGSATDPQSIYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDFNITTPK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03800 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Aip09g03800 330 SMART finulus 252 301 IPR011598 GO:0046983
Aip09g03800 330 Pfam Helix-loop-helix DNA-binding domain 256 296 IPR011598 GO:0046983
Aip09g03800 330 MobiDBLite consensus disorder prediction 156 175 - -
Aip09g03800 330 MobiDBLite consensus disorder prediction 156 202 - -
Aip09g03800 330 PANTHER TRANSCRIPTION FACTOR BHLH54 7 327 - -
Aip09g03800 330 Gene3D - 244 303 IPR036638 GO:0046983
Aip09g03800 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 327 - -
Aip09g03800 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 312 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03800 Aip-Chr9 144713094 144718103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03800 10 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.056 3.42e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g03800 HLH 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03800 - - adu:107467178 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03800 09 144713094 144718103 Aip09g03800 09 144713094 144718103 ECH