Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03787 ATGGTTGATGCTTTGAATGAAGTGCAACGCAGCGGCAATGCATTTGTTGTTCCTGCTAAGAGGGATGCTGTATTGTTTGAAGGAGACAAAGATTTAGAGCCACACAATGGGATTGAATTCGAATCTCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCAATGGGATTCACAACTTCGATCAAGAATAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCGTGCTCTCGGTATGGCGTTACACCTGAGTCTGACAGCGGGAGCAGTCGAAGACCCAGTGTAAAGAAGACAGATTGCAAAGCCTGCATGCATGTGAAAAGAAGGTCAGAAGGGAAGTGGATCATTCATGAATTTATAAAGGAACACAACCATGAACTCTTACCGGCTTTGGCATATCATTTTCGTATTCATAGGAATGTCAAGTTAGCTGAAAAGAATAATATTGATATTTTGCATGCTGTTAGTGAACGAACCAGAAAAATGTATGTTGAGATGTCTAGGCAGTCTGGTGGGTGTCGAAATACTGGATCCCTCTTGGGGGACGCAAATGATCAGTTTGACAGAGGCCGACAGTTGGCTTTGGATGAGGGAGATGCCCATTTCATACTGGAGTATTTTAAGCGCATCCAAAAGGAGAACCCCTATTTCTTCTATGCTATCGATTTAAATGAAGAGCAACGTTTAAGGAATCTATTCTGGGTTGATGCAAAAAGTAGGAACGATTATCTTAGCTTTAATGATGCAGTCTCATTTGATACCACTTACATCAAAAGCAATGATAAGTTACCATTtgctcctttcattggggtgaatcatcactctcaacctatattgcttgggtgtgctttgcttgcagatgagaccaagccaacatttgtctggttaatgaagacatggcttagagcgatgggagggcaagctcccaaaattataattaccgatcaagacaaagccttgaagacagcaattgaagAAGTCTTCCCAAATGCGAGACATTGCTTTGCTCTTTGGCACATACTTGAAAGGATACCTGAAAATCTATCTTCTGTGATCAAGCAGTATAAGAACTTCTTGCGAAAGTTAAACAAGTGCATTTTTAAGTCATGGACTGATGAAGAGTTTGACATGAGATGGTGGAAAATGGTCACTAGATTTGAACTTCAAGATGATCTATGGTGTCAATCACTGTATGAAGATCGGAAAAAGTGGGTGCCAACTTATATGGGGGATACTTTTTTAGCTGGAATGTCTACACCTCAGCGTTCTGAAAGTATGAACTCTTTCTTTGACAAATACATACACAAGAAAATCACCCTTAAAGAGTTTGTGAAACAATATGGGTTAATCCTTCAGAATAGGTATGAAGAGGAGGCAATTGCAGATTTTGATACATTGCACAAGCAGCCAGCACTCAGATCTCCTTCACCTTGGGAAAAACAAATGTCAACGGTTTATACACATGCTATATTTAAGAAATTCCAAGTTGAAGTTTTGGGTGTAGCTGGCTGTCAATCTAGAACAGAGCCTGGTGATGGATCAATTACAAAGTTTATAGTTCAAGATTATGAGAAAGATGAAGAGTTTTTGGTTACATGGAATGAGTTGAGCTCAGATGTCTCTTGTTTCTGTCGATTGTTTGAATATAAAGGTATCCTTTGCAGGCATGCGTTAAGTGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCACCTCATTATGTTATGAAAAGATGGACGAAAGATGCCAAAAGTAGGGAACCCATGGCAGATAGGACTCAGAAAGTACAAACAAGGGTGCAGCGTTATAATGATTTGTGTAAACGTGCTATTGATTTGAGTGAAGAAGGATCACTGTCTGAAGAGAGCTATAGTGTTGTTTTCCGTACACTTGTTGATACCCTGAAGAACTGTGTATATGTAAATAATTCTAACAACAATGGTGCAGAAACTAGCAACAATTCTTTTTCCGTTCATGAAGCAGAAGAAAATCAGGGTACCCTTCAATTGAAAGCAAGTAAGAAGAGGGGCACTGCTAGGAAAAGAAAGGTGCAGTCAGACCAGGAAGTTATGCTTGTTGACACACAAGATAGCCTGCAGCAAATGGATAATCTAAGCTCAGACACAATAACACTCAATGGATACTATGGTACCCAGCAGAGCATGCAAGGACTGCAGGTACGGTTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTCAATCAACAGAATATGCAAGGCTTGGGTCCCTTGAATTCTATGGCTCCTAGCCATGATGGGTTTTTTGGAGCTCAGCAAAGCATTCATGGGCTGGGAGGGCAACTGGAATTCCGCCCTGCTACTTCTTTCGGATATAGCCTTCAGGATGAGCCTGATCCTCTGTTCCATGGCAGTAGTTCTAGAAATACTTAG 2430 0.3737 MVDALNEVQRSGNAFVVPAKRDAVLFEGDKDLEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRRSEGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCRNTGSLLGDANDQFDRGRQLALDEGDAHFILEYFKRIQKENPYFFYAIDLNEEQRLRNLFWVDAKSRNDYLSFNDAVSFDTTYIKSNDKLPFAPFIGVNHHSQPILLGCALLADETKPTFVWLMKTWLRAMGGQAPKIIITDQDKALKTAIEEVFPNARHCFALWHILERIPENLSSVIKQYKNFLRKLNKCIFKSWTDEEFDMRWWKMVTRFELQDDLWCQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESMNSFFDKYIHKKITLKEFVKQYGLILQNRYEEEAIADFDTLHKQPALRSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRTEPGDGSITKFIVQDYEKDEEFLVTWNELSSDVSCFCRLFEYKGILCRHALSVLQRCGCSSVPPHYVMKRWTKDAKSREPMADRTQKVQTRVQRYNDLCKRAIDLSEEGSLSEESYSVVFRTLVDTLKNCVYVNNSNNNGAETSNNSFSVHEAEENQGTLQLKASKKRGTARKRKVQSDQEVMLVDTQDSLQQMDNLSSDTITLNGYYGTQQSMQGLQVRLNLMEPPHDGYYVNQQNMQGLGPLNSMAPSHDGFFGAQQSIHGLGGQLEFRPATSFGYSLQDEPDPLFHGSSSRNT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03787 809 Pfam MULE transposase domain 256 348 IPR018289 -
Aip09g03787 809 SMART 26again6 546 573 IPR006564 GO:0008270
Aip09g03787 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 724 IPR031052 GO:0006355
Aip09g03787 809 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Aip09g03787 809 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Aip09g03787 809 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 20 724 - -
Aip09g03787 809 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03787 Aip-Chr9 144641068 144645293 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip09g03787 MULE 6.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03787 - - lang:109346405 1430.23