Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03696 ATGGGTTTGCAAAACCAGCTAAACGACGTGTCGTCTGGTTCAATTCCACTGCTGCTGATTGCGCACATAGCCACCTGCGTCAACTACCTCCGTTCCATGCTCTTCGCTCTTCTCCAAACCCTAGGTCTCTCTAGGCTCCACACACACCAGATCGTCGACGACGGATTCTTCGCCACCGTCGGATCCGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTGGCCGTTAACAACCGATTCTTCTACACCTACACCGTCGTCGACCACGCCGACTCCGACGCCTGCGTCGTCTGCCAGACCAACTTCAAGGAAGGGGAACAGGTACGGATGCTTCCCTGCCGCCACGTCTTCCACCGCCACTGCTTCGACGGCTGGCTCCATCACTTCAAGTTCAACTGCCCTCTCTGCCGCTACCCGCTACTCTCCGACGAACGCGTGGCCCTCACGGAACGCCGCGTCGGTCGTGAACTCGTCTCGTGGTTCTCCCTTCGGTGA 495 0.5899 MGLQNQLNDVSSGSIPLLLIAHIATCVNYLRSMLFALLQTLGLSRLHTHQIVDDGFFATVGSGLAGLIMLSDQLAVNNRFFYTYTVVDHADSDACVVCQTNFKEGEQVRMLPCRHVFHRHCFDGWLHHFKFNCPLCRYPLLSDERVALTERRVGRELVSWFSLR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03696 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Aip09g03696 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 162 - -
Aip09g03696 164 Pfam Ring finger domain 94 137 IPR001841 -
Aip09g03696 164 SMART ring_2 95 136 IPR001841 -
Aip09g03696 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 146 IPR013083 -
Aip09g03696 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 162 - -
Aip09g03696 164 SUPERFAMILY RING/U-box 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03696 Aip-Chr9 143875164 143876349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03696 1 163 C3H Transcription Factor Family AT1G15100 50.920 2.57e-50 157