Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03585 ATGTTTCAGGAGACCACCGCCGTGGCCACTCGGTGGGGGACTGAGGCGGTGGAGGTGCGGATGAATCACTGGACTAGGGAGCAGGATAAGGTCTTCGAGAGAGCCTTGCTTTTCGTGCCGGAGGACTTACCGGACCGCTGGGATAAGATCGCCGAGCAGGTTCCCGGCAAGTCAGCCGTCGAAGTCAGGGACCGCTACGAGGCTTTGGTCCGCGACGTCTACGAAATCGACTCGGGCCGAGTCGAGGTGCCGAGGTACTCGGATGACTCGGCGGGTAGTGGCGGCGGTGGTGGAGGGTTGTACAGGTTGTTTTTGATTGGGCTAAAAAAATTTGGAAAGGGAGATTGGAGAAGCATTTCAAGGAATGTGGTTGTTACAAGAACACCTACTCAAGTAGCTAGCCATGCCCAAAAGTACTTTCTATGCCAGAATTCGGGGAAGAAAGAGAGGAAGAGATCAAGCATCCATGATATAACCACGGTGGATAGCAACTCTGTGCCTGTGCCTGTTGATCAGAATTGGGTTGCTCCTCCACAGCAAGAGATGCAGCAACACCAACAGCACCAGCACTTTAATCCGCACAATCATGTGGGTGCTGGTGGGTTTGGGTATTCAAACTACGGTGGCTTTTGA 633 0.534 MFQETTAVATRWGTEAVEVRMNHWTREQDKVFERALLFVPEDLPDRWDKIAEQVPGKSAVEVRDRYEALVRDVYEIDSGRVEVPRYSDDSAGSGGGGGGLYRLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLCQNSGKKERKRSSIHDITTVDSNSVPVPVDQNWVAPPQQEMQQHQQHQHFNPHNHVGAGGFGYSNYGGF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03585 210 SMART sant 20 72 IPR001005 -
Aip09g03585 210 SMART sant 97 142 IPR001005 -
Aip09g03585 210 Pfam Myb-like DNA-binding domain 104 140 IPR001005 -
Aip09g03585 210 Pfam Myb-like DNA-binding domain 22 66 IPR001005 -
Aip09g03585 210 CDD SANT 24 70 IPR001005 -
Aip09g03585 210 Gene3D - 18 83 - -
Aip09g03585 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 144 IPR017930 -
Aip09g03585 210 SUPERFAMILY Homeodomain-like 101 144 IPR009057 -
Aip09g03585 210 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 142 IPR006447 GO:0003677
Aip09g03585 210 CDD SANT 102 140 IPR001005 -
Aip09g03585 210 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 91 IPR043363 -
Aip09g03585 210 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 102 197 IPR043363 -
Aip09g03585 210 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 20 91 - -
Aip09g03585 210 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 102 197 - -
Aip09g03585 210 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Aip09g03585 210 ProSiteProfiles Myb-like domain profile. 16 70 IPR001005 -
Aip09g03585 210 Gene3D - 101 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03585 Aip-Chr9 142569524 142570474 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g03585 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03585 - - adu:107467340 328.176