Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03575 ATGGCGGTGGGAATATCAGTTCTGATAGCACTGAAAGCGACGGCGCTATTACTGTGCTTCGTGTACTTGAAGAACCATGGCTACACCCTCATCTCCGCCCCATTCCTCTACGCATCACTCGTTTCGTTCTTGGTCTCGATCGCATCTCACCCCTCCATTGACCTTCCCATGCTTTTAGGAAAGGACACCGATGGAACCTTCCCAATCTGGTCCCTCATGATGTTCAGCCCTTACTTGTACTTCGTCAGATTCTTCTCCGCGCTCCGAAGGCTCCGAAGCGGTGAACCACCATACACTGAAGTCCACCCTGGACTCTTCGTCGGAGGGTGGCCATCGTCGCGCCAGAAGCTGCCACCTGGCGACCCTGCCATCGTTGATTGCACCTGCGAGTTCCCGAGGTTGGAGGAGTTCTCTGGGCTTCCTTATCTGTGCATTCCCACATGGGATACAAGGTCACCCAAGCCCTCTGATATTGAATCTGCTGTTAAGTGGGCTTCTAAGAAGAGAGACCTCAATAAACCTATTTTTATTCACTGTGCTTATGGTCATGGAAGAAGTGTTGCTGTTATGTGTGCATTGCTAGTGGCACTGGGTATTGCAGAGGATTGGAAGAATGCTGAGAAGCTGATCAAACAAAAACGGCCTTACATCCGGATGAATGCCCTCCATCGCAAGGCCCTTGAAGAATGGTCCAAGCACAGTGGACGCGAGTTCGGTTGTGTTTTTGTCTCACCGAACCCGCAAAAGGCCACTTTCAATTTTTGCGATCTTGACTTCAACCCTTTCGCCTCTCTCCCTCTCACTCTATATATAACCCCCTCTTCTCGCATCTTCCTTCGCGCAAACTCTCCAGCACTTAACTTCATCGCTTCAATTATTCAGGTGAAAATGTCAATTGTGAACCTGTCCACTGTGAGAATTCCAGCAGCTTCCTTGAATGGAGCAACAACTCCAAGGAGATCTTGTGCTCTTATTAAGAGTTCATCATCTTTGAGCTCAGTGAAGAACGCCTCCAAAGTATTCGGATTGAAATCTTCCTCCTCCTTTAGAGTGTCTGCGATGGCAGTATACAAAGTGAAACTGATTGGGCCCGATGGCGAAGAGAACGAATTTGAAGCCCCCGATGACTCCTACATTTTGGATTCGGCCGAGAATGCTGGGCTCGAGCTGCCTTACTCGTGCAGGGCCGGTGCCTGCTCTACTTGTGCTGGCCAAATAGTTTCGGGCTCTGTGGATCAATCTGATCAATCCTTTTTGGATGACCAGCAAACGGAAAAGGGTTATCTCCTCACATGTGTCTCATACCCAAAATCTGATTGTGTCATTTACACCCATAAGGAGGGAGATCTATGCTAA 1356 0.4904 MAVGISVLIALKATALLLCFVYLKNHGYTLISAPFLYASLVSFLVSIASHPSIDLPMLLGKDTDGTFPIWSLMMFSPYLYFVRFFSALRRLRSGEPPYTEVHPGLFVGGWPSSRQKLPPGDPAIVDCTCEFPRLEEFSGLPYLCIPTWDTRSPKPSDIESAVKWASKKRDLNKPIFIHCAYGHGRSVAVMCALLVALGIAEDWKNAEKLIKQKRPYIRMNALHRKALEEWSKHSGREFGCVFVSPNPQKATFNFCDLDFNPFASLPLTLYITPSSRIFLRANSPALNFIASIIQVKMSIVNLSTVRIPAASLNGATTPRRSCALIKSSSSLSSVKNASKVFGLKSSSSFRVSAMAVYKVKLIGPDGEENEFEAPDDSYILDSAENAGLELPYSCRAGACSTCAGQIVSGSVDQSDQSFLDDQQTEKGYLLTCVSYPKSDCVIYTHKEGDLC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03575 451 Pfam Dual specificity phosphatase, catalytic domain 124 232 IPR000340 GO:0008138|GO:0016311
Aip09g03575 451 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 394 402 IPR006058 GO:0051537
Aip09g03575 451 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 357 448 IPR001041 GO:0051536
Aip09g03575 451 CDD DSP_bac 94 232 - -
Aip09g03575 451 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 156 225 IPR000387 GO:0016311|GO:0016791
Aip09g03575 451 CDD fer2 359 442 IPR001041 GO:0051536
Aip09g03575 451 SMART dsp_5 97 233 IPR020422 GO:0006470|GO:0008138
Aip09g03575 451 SUPERFAMILY 2Fe-2S ferredoxin-like 352 447 IPR036010 GO:0051536
Aip09g03575 451 PANTHER OS01G0859400 PROTEIN 3 234 - -
Aip09g03575 451 PANTHER - 3 234 - -
Aip09g03575 451 Gene3D - 354 451 IPR012675 -
Aip09g03575 451 Gene3D Protein tyrosine phosphatase superfamily 98 236 IPR029021 -
Aip09g03575 451 Pfam 2Fe-2S iron-sulfur cluster binding domain 364 437 IPR001041 GO:0051536
Aip09g03575 451 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 232 IPR029021 -
Aip09g03575 451 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 355 450 IPR010241 GO:0009055|GO:0022900|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03575 Aip-Chr9 142481226 142486478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03575 133 232 Protein tyrosine phosphatase (PTP) family AT5G56610 28.846 9.26e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03575 - - aprc:113873203 414.461