Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03560 ATGGCGCAATCATCTTCATCAGCATCGCTGTTTGGATTTAGAGGAGAAGATCAGAACCAGATGAAGGAACAGCATTCCTTGCCTCCATCATCTTCAACCACCTCATCTGCACCACCACAGCAGAAGAAAAAACGAAATCAACCTGGAACCCCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGGAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCTCGTGCTCTTGGTGACCTCACTGGCATCAAGAAGCACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAGTACGCTGTTCAATCCGATTGGAAAGCTCATTCCAAGACCTGTGGCACTAGAGAATACAGATGTGATTGTGGAACTCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGAGCTTTCTGCGATGCATTGGCTCAAGAAAGTGCAAGGCAGCCACCGAACCTGAACAACGCCATTGGAACCCACCTTTATGGAAGCACCAACAACAACATGGCCCTTGGCTTATCTCAGGTGGGTATGGGTATGGGTGTTGGTGTTGGTGTTGGTGTTGGTGTAGGTGTGGGTGTGGGTCCACAACAGATACCCACCGCCATGCAAGAATCTAGCACTGATCTCTTGCGTCTTAGTGGTCGAACCGGTCAATTAGACCATCACATGCTTCCACCACCACCATCATCCTTTAGAACTTCACACCATCAACCATTCTTCATGAATGATCATCAAAACTTCCATGGCCACCAGGGACTCATGCAACTATCTGATCTTAACAACAATAGCAACAACAGCATGGATAATAATTCTCCATCAGGAGGAGGAGGAGGAGCTAATAATAATAGTAGTAACAACAATAATAATAATAATAACAGTAACCTCTTCAACCTTCCATTCCTTTCAAGCAACAGCACTAACAGCAGCAACAACTCTTTCTCTGATCAGCATGGTAACAACAACAACAACAATGAAGGGAACAACAGTTTCTTCACCGGTGCAGGTGGAAGTGCTATAATGCACCAAACAACCTCATCAACTGCACCATCACTCTTCAGCAATTCCCTCGAAACAAGCAACAACAACAACAACAGCGGTTCCATTTCTCACATGTCCGCAACTGCACTCCTTCAGAAAGCAGCACAAATGGGTGCAACTACAAGCAACAGCACCGCCTCACTCCTCAAGAGCTTCGGAGCCACTTCCACAACCAGCGCAGCTGCAAAACCACCTCATGATCATCATCATCACCTGAGGGCGGCAACAATGGTGAGCAGTGCTGCTGCTGCAGCAAACTATGGAAGCATATTCGGGTCAGGGAGCGAGCAGGGTAACCTCCAGGATCTGATGAACTCGTTTGCCACTGTAGCTTCCGCTGGACACTCTTCTTCCATGTTCGAAAGCGGTGGAGGTTCTTCTGTAGGGCTTATGGCTGGGTTTGATCATGCATACGATCATAGCTCAAACAGTAGGGAGCATAAGCTGCATGGAGTGAGCATTGGTGGTGGCTCCGATGGGCTCACTAGGGACTTTCTCGGTGTTGGTCAAGTAGTTAGAACCATGAGCAGTGGCGGCGGCGGTGGAGGCGGCGGTGGAGGAGGAGTTTCTCGAAGAGAACAACAGCAACAACATTGCTTCACGTTGAGCTCGATGGAAGCTGAAAGGAATAGTAATGCTGCGCCGTCAGGGCAATCTTTCGGTAGTAGTGGCGGTGGAGGAGGGAATTTTCAGTGA 1905 0.4845 MAQSSSSASLFGFRGEDQNQMKEQHSLPPSSSTTSSAPPQQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLNNAIGTHLYGSTNNNMALGLSQVGMGMGVGVGVGVGVGVGVGPQQIPTAMQESSTDLLRLSGRTGQLDHHMLPPPPSSFRTSHHQPFFMNDHQNFHGHQGLMQLSDLNNNSNNSMDNNSPSGGGGGANNNSSNNNNNNNNSNLFNLPFLSSNSTNSSNNSFSDQHGNNNNNNEGNNSFFTGAGGSAIMHQTTSSTAPSLFSNSLETSNNNNNSGSISHMSATALLQKAAQMGATTSNSTASLLKSFGATSTTSAAAKPPHDHHHHLRAATMVSSAAAAANYGSIFGSGSEQGNLQDLMNSFATVASAGHSSSMFESGGGSSVGLMAGFDHAYDHSSNSREHKLHGVSIGGGSDGLTRDFLGVGQVVRTMSSGGGGGGGGGGGVSRREQQQQHCFTLSSMEAERNSNAAPSGQSFGSSGGGGGNFQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03560 634 SMART c2h2final6 147 167 IPR013087 -
Aip09g03560 634 SMART c2h2final6 112 142 IPR013087 -
Aip09g03560 634 SMART c2h2final6 71 93 IPR013087 -
Aip09g03560 634 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Aip09g03560 634 MobiDBLite consensus disorder prediction 305 424 - -
Aip09g03560 634 MobiDBLite consensus disorder prediction 593 634 - -
Aip09g03560 634 MobiDBLite consensus disorder prediction 1 56 - -
Aip09g03560 634 MobiDBLite consensus disorder prediction 22 48 - -
Aip09g03560 634 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Aip09g03560 634 MobiDBLite consensus disorder prediction 578 634 - -
Aip09g03560 634 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Aip09g03560 634 MobiDBLite consensus disorder prediction 274 424 - -
Aip09g03560 634 Gene3D Classic Zinc Finger 125 204 - -
Aip09g03560 634 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Aip09g03560 634 Gene3D Classic Zinc Finger 50 119 - -
Aip09g03560 634 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 581 - -
Aip09g03560 634 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03560 Aip-Chr9 142329031 142333319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03560 42 204 IDZ Gene Family AT3G50700 85.276 8.72e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip09g03560 zf-C2H2_jaz 3.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03560 K25870 - gmx:100786121 574.318