Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03548 ATGGCAACTTGTGGAAGAGAAGGAGCGGTGAGACAGTACATAAGATCCAAGGTTCCTCGTTTGAGATGGACTCCTGAGCTTCATCGATGCTTTGTTCATGCCATTGATAGCCTTGGAGGTCATCACAGTAAGTTTGTTTCTTTTTTGTTTCAATTTCTGGTACCCTTTCTTTCTTATGAAATTTTGTTTCCTTTTGTAGAGGCTACCCCTAAGCTTGTTCTTCAGTTGATGGACGTTAAAGGCCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGAAGACAAGGTAGGATTTCATCAAGCCAACATAGGAACCAATCTTTTGAGGAACATGATGATGGATGTGTTGAAGAAGTGAATGATGTTAATAATAATAATAATAATCATAATCAAAACTATCATCCATGTTCACAATCCATTGGAAAAGAATCCGATTCTCTCTTCGGATACAGTAACTTCTCCCCAAAAAGGGCTAGAATAGAGAGAAACTATTCCATATCTCAGAACCTGCAATGCAGGAACCAAAGAACAGTGCCATATCCGTACTCCTTTTATGATTATGCTTATTCAACTCAACAACAACAACATCAACCACCTCATTCCACAGTTTTCCCTATGCTGCCACCACTTCTTGGAAATTTCCTCCAGGTTACTAAATTAAATGATAGAGAGACCACTTCGGAGGCAATGACTAATAATAATAATAATAATAATGTACTTTTGAACATCAACAAAAACAACAACACTGAAAAGAAGGCACGTGCAGAAGAAGATGAAGATGAAGATGTAGGGAGAGAGTGTGAGTTGTCATTGTCTCTCACATTGCCAAATCCTTCACCCCAGAGAAGTAGTAATGTTTCTTCAGCCAGTGAGATCACTGAGGCTGCTATCTCTTCATCATGTTCCACTACTCTCAAACATAGGATTAATTTAGACTTGTCTCTATCCCTTTGTTGA 984 0.3913 MATCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHSKFVSFLFQFLVPFLSYEILFPFVEATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRISSSQHRNQSFEEHDDGCVEEVNDVNNNNNNHNQNYHPCSQSIGKESDSLFGYSNFSPKRARIERNYSISQNLQCRNQRTVPYPYSFYDYAYSTQQQQHQPPHSTVFPMLPPLLGNFLQVTKLNDRETTSEAMTNNNNNNNVLLNINKNNNTEKKARAEEDEDEDVGRECELSLSLTLPNPSPQRSSNVSSASEITEAAISSSCSTTLKHRINLDLSLSLC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03548 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 47 IPR044848 GO:0003700
Aip09g03548 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 198 327 IPR044848 GO:0003700
Aip09g03548 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 67 206 IPR044848 GO:0003700
Aip09g03548 327 SUPERFAMILY Homeodomain-like 17 96 IPR009057 -
Aip09g03548 327 MobiDBLite consensus disorder prediction 102 121 - -
Aip09g03548 327 Gene3D - 18 98 - -
Aip09g03548 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 67 96 IPR006447 GO:0003677
Aip09g03548 327 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 47 - -
Aip09g03548 327 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 67 206 - -
Aip09g03548 327 MobiDBLite consensus disorder prediction 253 273 - -
Aip09g03548 327 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 198 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03548 Aip-Chr9 142147705 142151071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03548 1 98 G2-like Transcription Factor Family AT1G14600 55.340 2.73e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip09g03548 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03548 - - ahf:112712187 513.072