Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g03540 ATGGCTTCTTCTTCTCAGTGGCGTGGCAAGGCTATAATCCCTGTCCATTTCTCAGCTATTATCTTCAAGAAAACTGATCTTCAGAGTCTGAAAATATCAAGTAAATTTACAAGGACATATGGAGGTGGTTTGTTTAATCCAATGTTTTTGAAGCCTCCAGATGGCACCAAATGGGAAGTGAATTGGACTAGAAAAAATGATGATGAGGTTTGGTTCGAAAAGGGTTGGAACAAATTCACTCAAAACTACTCCTTAGATGATGGCCACTTGATTCTTTTCACCTATCATGGAAATTCACAACTTGATGTTCACATCTTTGACAAATCTGCCTCTGAAATACTCTATCCGGGGTTAAACACTACTCCTACTACTGCTTGTGATGATGAAAAGAACATCAAACTTGATCTCATGCACAATGATGATGATGATGATGACTCAATTGAGATTTTGAAGCCTTGTAAACACAAACGCAGCATGCTAGTGTTGGTTCCTCAACCTTGTAATAAAAGAATGAAAGCAGATAAGAAGAAGGTTGCTGAAAGAAGATCAAGTTGTTCATCATTGAATTGGCCAAAGCAAGAAAGAGCACAGGAAGTAGCTATGAACTTCGTGTCTGATAATCCTTTCTTCACAATGTTCATAACCCATATCCATCTTTCACACTACAAAGCGGCTGTGCCAAACATGAAAGAGTATACTGATGAGGATGAGAAGGATGTGGAGCTGAAAATTGGGGAGAAATCGTGGAAAGTCAAACTGAGGCGTGGTAGCAACTCTTCAAATTGTCGGTACTTGGGTGGTGGATGGTCCTTGTTTGCAGATCAGAGTGAATTGCTTCCTGGAGATGTTTGTGTCTTTGAGCTCATCAACATTCATCCTTTGCAGTTTAGGGTTCATATTTTCAAAAAGCAGCAGAGTTAG 921 0.3963 MASSSQWRGKAIIPVHFSAIIFKKTDLQSLKISSKFTRTYGGGLFNPMFLKPPDGTKWEVNWTRKNDDEVWFEKGWNKFTQNYSLDDGHLILFTYHGNSQLDVHIFDKSASEILYPGLNTTPTTACDDEKNIKLDLMHNDDDDDDSIEILKPCKHKRSMLVLVPQPCNKRMKADKKKVAERRSSCSSLNWPKQERAQEVAMNFVSDNPFFTMFITHIHLSHYKAAVPNMKEYTDEDEKDVELKIGEKSWKVKLRRGSNSSNCRYLGGGWSLFADQSELLPGDVCVFELINIHPLQFRVHIFKKQQS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g03540 306 Gene3D - 14 111 IPR015300 -
Aip09g03540 306 Pfam B3 DNA binding domain 230 303 IPR003340 GO:0003677
Aip09g03540 306 Pfam B3 DNA binding domain 28 108 IPR003340 GO:0003677
Aip09g03540 306 Gene3D - 189 305 IPR015300 -
Aip09g03540 306 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Aip09g03540 306 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 303 - -
Aip09g03540 306 SUPERFAMILY DNA-binding pseudobarrel domain 205 303 IPR015300 -
Aip09g03540 306 SUPERFAMILY DNA-binding pseudobarrel domain 19 116 IPR015300 -
Aip09g03540 306 CDD B3_DNA 21 107 IPR003340 GO:0003677
Aip09g03540 306 PANTHER B3 DOMAIN-CONTAINING 13 303 - -
Aip09g03540 306 SMART B3_2 209 304 IPR003340 GO:0003677
Aip09g03540 306 SMART B3_2 22 109 IPR003340 GO:0003677
Aip09g03540 306 CDD B3_DNA 209 302 IPR003340 GO:0003677
Aip09g03540 306 ProSiteProfiles B3 DNA-binding domain profile. 209 304 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g03540 Aip-Chr9 142098493 142099772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g03540 17 302 B3 DNA Binding Superfamily AT3G18990 27.221 1.42e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip09g03540 B3 5.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g03540 - - aip:107616196 571.622